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The map label for this gene is ynfA [C]

Identifier: 159184596

GI number: 159184596

Start: 1049092

End: 1049415

Strand: Direct

Name: ynfA [C]

Synonym: Atu1058

Alternate gene names: 159184596

Gene position: 1049092-1049415 (Clockwise)

Preceding gene: 15888390

Following gene: 15888401

Centisome position: 36.92

GC content: 62.04

Gene sequence:

>324_bases
ATGAAGGTCTATCTTATCTATGTTCTGGCGGCCGTTGCCGAAATCGCCGGCTGTTTTTCCTTCTGGGCCTGGCTGAAACT
CGGCAAGACCGGCTGGATATTGCTGCCCGGCATGGTGGCGCTGGCCGCTTTTGCGTGGCTTCTGACGCTGGTTGCGACGG
AGGCGGCGGGCAGGGCCTATGCCGCCTATGGCGGGATCTATATTGCCGCCTCGCTGTTCTGGCTCTGGGGCGTGGAAGGC
CATGCACCGGACAGGTGGGATATTGCCGGCGGTGTCGTCTGCCTTGCCGGCACCGCCATCATCCTGTTCGGACCAAGGGG
TTGA

Upstream 100 bases:

>100_bases
CCTGTCTATAGTGGTCGTCACTCGGAAAAATCGATTCCGGTTTCCGCGCCGATGGTTATAGTCCGGAACGGGTGCGATTG
TGCATGCTAAAGACGGTGGA

Downstream 100 bases:

>100_bases
GGAGAAGGCCATGTGCGGACGTTTCGTGCTAAAGGCAACGCCGGAAGAGATCGCCGATTATCTCGATCTGATCGGCCTTG
AGGATTTTCCCGCCCGTTTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 107; Mature: 107

Protein sequence:

>107_residues
MKVYLIYVLAAVAEIAGCFSFWAWLKLGKTGWILLPGMVALAAFAWLLTLVATEAAGRAYAAYGGIYIAASLFWLWGVEG
HAPDRWDIAGGVVCLAGTAIILFGPRG

Sequences:

>Translated_107_residues
MKVYLIYVLAAVAEIAGCFSFWAWLKLGKTGWILLPGMVALAAFAWLLTLVATEAAGRAYAAYGGIYIAASLFWLWGVEG
HAPDRWDIAGGVVCLAGTAIILFGPRG
>Mature_107_residues
MKVYLIYVLAAVAEIAGCFSFWAWLKLGKTGWILLPGMVALAAFAWLLTLVATEAAGRAYAAYGGIYIAASLFWLWGVEG
HAPDRWDIAGGVVCLAGTAIILFGPRG

Specific function: Unknown

COG id: COG1742

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0060 family

Homologues:

Organism=Escherichia coli, GI1787865, Length=104, Percent_Identity=44.2307692307692, Blast_Score=81, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1058_AGRT5 (Q8UGH9)

Other databases:

- EMBL:   AE007869
- PIR:   A97489
- PIR:   AI2706
- RefSeq:   NP_354081.2
- STRING:   Q8UGH9
- GeneID:   1133096
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1058
- eggNOG:   COG1742
- HOGENOM:   HBG313568
- OMA:   ALWVIPA
- ProtClustDB:   PRK02237
- BioCyc:   ATUM176299-1:ATU1058-MONOMER
- HAMAP:   MF_00010
- InterPro:   IPR003844

Pfam domain/function: PF02694 UPF0060

EC number: NA

Molecular weight: Translated: 11394; Mature: 11394

Theoretical pI: Translated: 8.20; Mature: 8.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0xb644bb8)-; HASH(0xdf96024)-; HASH(0xc71c520)-; HASH(0xe2efe3c)-;

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVYLIYVLAAVAEIAGCFSFWAWLKLGKTGWILLPGMVALAAFAWLLTLVATEAAGRAY
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHH
AAYGGIYIAASLFWLWGVEGHAPDRWDIAGGVVCLAGTAIILFGPRG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEECCCEEEEECCCH
>Mature Secondary Structure
MKVYLIYVLAAVAEIAGCFSFWAWLKLGKTGWILLPGMVALAAFAWLLTLVATEAAGRAY
CEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHH
AAYGGIYIAASLFWLWGVEGHAPDRWDIAGGVVCLAGTAIILFGPRG
HHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEECCCEEEEECCCH

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194