| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is rsh [H]
Identifier: 159184586
GI number: 159184586
Start: 1022661
End: 1024895
Strand: Direct
Name: rsh [H]
Synonym: Atu1030
Alternate gene names: 159184586
Gene position: 1022661-1024895 (Clockwise)
Preceding gene: 159184585
Following gene: 159184587
Centisome position: 35.99
GC content: 60.27
Gene sequence:
>2235_bases ATGATGCGGCAATACGAACTCGTCGAGCGGGTTCAAAAATATAAACCGGATGCGAATGAGGCCCTGCTGAACAAGGCCTA TGTTTACGCGATGCAGAAACATGGCCAGCAGAAGCGGGCCAATGGCGACCCCTATATCTCGCATCCGCTTGAAGTTGCCG CGATCCTCACCGAAATGCATCTCGACGAATCGACCATCGCGGTGGCGTTGCTGCACGATACGATCGAGGACACCACCGCC ACCCGCGCTGAAATCGATGAACTCTTCGGCGAAGACATCGGCCGGCTGGTGGAGGGGCTCACCAAGCTCAAGAAGCTCGA TCTCGTCACCCGCAAGGCGAAGCAGGCGGAAAACCTGCGCAAGCTGCTGCTCGCCATTTCTGACGACGTGCGCGTTCTTC TGGTCAAGCTCGCCGACCGCCTGCACAATATGCGTACCATGGAATATATGCCGGCCGACAAGCGCAGCCGCATTTCCGAG GAGACGATGGAAATCTATGCGCCGCTCGCCGGCCGCATGGGTATGCAGGATATGCGCGACGAGCTGGAGGACCTGTCCTT CCGTTATCTCAATCCGGAAGCCTATGAGACGGTGACCAACCGCCTGCTGGAACTGGAAACGCGCAATGAAGGCCTCATCA AGAAGATCGAGGATGAGCTGCGCGAACTTCTGGTGGCCAACGGGTTGCTCGGCACCCACGTCAAGGGACGTCAGAAAAAG CCCTATTCGGTGTTCCGCAAGATGCAGTCGAAGTCGCTCTCCTTCGAACAGCTTTCCGATGTTTACGGTTTCCGAATTCT GGTGGACGATATTCCCGGCTGCTACCGGGCGCTGGGCATCGTGCACACCCGCTGGCGCGTGGTACCGGGCCGCTTCAAGG ACTATATCTCCACCCCGAAGCAGAACGATTATCGCTCCATCCACACCACCATCGTCGGCCCGTCGCGCCAGCGTATCGAG CTCCAGATCCGCACCAAGCGCATGCATGAGATCGCCGAATTCGGCATCGCCGCCCATGCGCTCTACAAGGATGGTGAAAA CGGGGAGGGCGATCTGCTTTCGAAAGAAAGCAATGCCTATTCCTGGCTGCGCCACACCATCGAATCGCTGGCCGAAGGCG ACAGCCCGGAAGAGTTCCTGGAGCATACCAAGCTCGAACTGTTCCAGGACCAGGTGTTCTGCTTCACGCCCAAGGGCAAG CTGATTGCCCTGCCGCGGGGCGCGACCCCCATCGATTTCGCCTATGCGGTGCACACCAATATCGGTGACACCACCGTCGG CGCGAAGATCAACGGGCGGATCATGCCGCTCGTGACCCGGCTCAACAATGGCGACGAGGTGGAGATCATCCGATCCGGCG TGCAGGTGCCGCCCGCGGCCTGGGAAGAGGTTGTGGTGACGGGCAAGGCCCGCTCGGCCATTCGCCGCGCCACCCGCATG GCCATCCGCAAGCAATATTCCGGCCTCGGTTACCGTATTCTCGAGCGAACCTTCGAACGCGCCGGCAAGGCATTCTCGCG TGAAGCTTTGAAACCCGTGTTGCATCGCCTGGCGCAGAAGGATGTGGAAGATGCCATCGCCGCCGTCGGTCGCGGTGAGG TCTCGTCGCTCGATGTGCTGCGTGCGGTGTTCCCGGATTATCAGGACGAGCGCGTGACAGTGAAGATGACCGGCGACGAC GGCTGGTTCAACATGCGCAGCGCTTCCGGCATGGTCTTCAAGATTCCCGGTAAGTCGCGCTCCGTTCTGGAGGACGATGG CGCCGCCGAGATGCTGGACGGACCCGACCCGCTGCCCATCCGTGGCCTCTCCGGCAATGTCGACGTGCATTTCAGTGCCG CCGGCGCCGTTCCCGGTGACCGCATTGTCGGCATCATGGAAAAAGGCAAGGGTATCACCATCTATCCCATTCAGGCGCCG GCGCTGCAACGCTTCGACGACGAACCGGAACGCTGGATCGATGTGCGCTGGGATCTGGACGAGGCGAACAAGTCGCGCTT CATGGCGCGGGTGATGATCAATGCGCTGAACGAGCCGGGGACGCTTGCCTCGGTGGCGCAATCGATCGCGACGCTAGATG TCAACATCCGCGGGCTCAACATGGTCCGCATCGGCACTGACTTCTCAGAGCTGGCGCTGGATGTCGAAGTATGGGATTTG CGGCAACTGAACCAGTTGCTGTCGCAGCTCAAGGATCTCGATTGCGTGTCGACTGTCGCGCGTGCCTTCGATTGA
Upstream 100 bases:
>100_bases TTACCGTCTGTCAATAGTTGCCGTCATAATCTGATCCCTATTGATGCAGCATTGTGCGCCGACCCCAAGGTTGGCGCGCT TTCTTTTTGTGGAATATCGC
Downstream 100 bases:
>100_bases GGCATTTTTGATCTTCTGCAAATACCAAAAGGCCGTTGTTATGCGTCGAGTGCATGGCAGCGGCCTTTTCCTGTCTCTGG TCGTTGATGGGGTTTGCGAT
Product: GTP pyrophosphohydrolase/synthetase
Products: NA
Alternate protein names: (p)ppGpp synthase; ATP:GTP 3'-pyrophosphotransferase [H]
Number of amino acids: Translated: 744; Mature: 744
Protein sequence:
>744_residues MMRQYELVERVQKYKPDANEALLNKAYVYAMQKHGQQKRANGDPYISHPLEVAAILTEMHLDESTIAVALLHDTIEDTTA TRAEIDELFGEDIGRLVEGLTKLKKLDLVTRKAKQAENLRKLLLAISDDVRVLLVKLADRLHNMRTMEYMPADKRSRISE ETMEIYAPLAGRMGMQDMRDELEDLSFRYLNPEAYETVTNRLLELETRNEGLIKKIEDELRELLVANGLLGTHVKGRQKK PYSVFRKMQSKSLSFEQLSDVYGFRILVDDIPGCYRALGIVHTRWRVVPGRFKDYISTPKQNDYRSIHTTIVGPSRQRIE LQIRTKRMHEIAEFGIAAHALYKDGENGEGDLLSKESNAYSWLRHTIESLAEGDSPEEFLEHTKLELFQDQVFCFTPKGK LIALPRGATPIDFAYAVHTNIGDTTVGAKINGRIMPLVTRLNNGDEVEIIRSGVQVPPAAWEEVVVTGKARSAIRRATRM AIRKQYSGLGYRILERTFERAGKAFSREALKPVLHRLAQKDVEDAIAAVGRGEVSSLDVLRAVFPDYQDERVTVKMTGDD GWFNMRSASGMVFKIPGKSRSVLEDDGAAEMLDGPDPLPIRGLSGNVDVHFSAAGAVPGDRIVGIMEKGKGITIYPIQAP ALQRFDDEPERWIDVRWDLDEANKSRFMARVMINALNEPGTLASVAQSIATLDVNIRGLNMVRIGTDFSELALDVEVWDL RQLNQLLSQLKDLDCVSTVARAFD
Sequences:
>Translated_744_residues MMRQYELVERVQKYKPDANEALLNKAYVYAMQKHGQQKRANGDPYISHPLEVAAILTEMHLDESTIAVALLHDTIEDTTA TRAEIDELFGEDIGRLVEGLTKLKKLDLVTRKAKQAENLRKLLLAISDDVRVLLVKLADRLHNMRTMEYMPADKRSRISE ETMEIYAPLAGRMGMQDMRDELEDLSFRYLNPEAYETVTNRLLELETRNEGLIKKIEDELRELLVANGLLGTHVKGRQKK PYSVFRKMQSKSLSFEQLSDVYGFRILVDDIPGCYRALGIVHTRWRVVPGRFKDYISTPKQNDYRSIHTTIVGPSRQRIE LQIRTKRMHEIAEFGIAAHALYKDGENGEGDLLSKESNAYSWLRHTIESLAEGDSPEEFLEHTKLELFQDQVFCFTPKGK LIALPRGATPIDFAYAVHTNIGDTTVGAKINGRIMPLVTRLNNGDEVEIIRSGVQVPPAAWEEVVVTGKARSAIRRATRM AIRKQYSGLGYRILERTFERAGKAFSREALKPVLHRLAQKDVEDAIAAVGRGEVSSLDVLRAVFPDYQDERVTVKMTGDD GWFNMRSASGMVFKIPGKSRSVLEDDGAAEMLDGPDPLPIRGLSGNVDVHFSAAGAVPGDRIVGIMEKGKGITIYPIQAP ALQRFDDEPERWIDVRWDLDEANKSRFMARVMINALNEPGTLASVAQSIATLDVNIRGLNMVRIGTDFSELALDVEVWDL RQLNQLLSQLKDLDCVSTVARAFD >Mature_744_residues MMRQYELVERVQKYKPDANEALLNKAYVYAMQKHGQQKRANGDPYISHPLEVAAILTEMHLDESTIAVALLHDTIEDTTA TRAEIDELFGEDIGRLVEGLTKLKKLDLVTRKAKQAENLRKLLLAISDDVRVLLVKLADRLHNMRTMEYMPADKRSRISE ETMEIYAPLAGRMGMQDMRDELEDLSFRYLNPEAYETVTNRLLELETRNEGLIKKIEDELRELLVANGLLGTHVKGRQKK PYSVFRKMQSKSLSFEQLSDVYGFRILVDDIPGCYRALGIVHTRWRVVPGRFKDYISTPKQNDYRSIHTTIVGPSRQRIE LQIRTKRMHEIAEFGIAAHALYKDGENGEGDLLSKESNAYSWLRHTIESLAEGDSPEEFLEHTKLELFQDQVFCFTPKGK LIALPRGATPIDFAYAVHTNIGDTTVGAKINGRIMPLVTRLNNGDEVEIIRSGVQVPPAAWEEVVVTGKARSAIRRATRM AIRKQYSGLGYRILERTFERAGKAFSREALKPVLHRLAQKDVEDAIAAVGRGEVSSLDVLRAVFPDYQDERVTVKMTGDD GWFNMRSASGMVFKIPGKSRSVLEDDGAAEMLDGPDPLPIRGLSGNVDVHFSAAGAVPGDRIVGIMEKGKGITIYPIQAP ALQRFDDEPERWIDVRWDLDEANKSRFMARVMINALNEPGTLASVAQSIATLDVNIRGLNMVRIGTDFSELALDVEVWDL RQLNQLLSQLKDLDCVSTVARAFD
Specific function: Functions as a (p)ppGpp synthase. In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance. Plays a role in ada
COG id: COG0317
COG function: function code TK; Guanosine polyphosphate pyrophosphohydrolases/synthetases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 HD domain [H]
Homologues:
Organism=Homo sapiens, GI38348360, Length=131, Percent_Identity=41.9847328244275, Blast_Score=77, Evalue=5e-14, Organism=Escherichia coli, GI1790082, Length=696, Percent_Identity=36.9252873563218, Blast_Score=458, Evalue=1e-130, Organism=Escherichia coli, GI1789147, Length=730, Percent_Identity=30.958904109589, Blast_Score=351, Evalue=7e-98, Organism=Caenorhabditis elegans, GI25143118, Length=134, Percent_Identity=39.5522388059701, Blast_Score=77, Evalue=3e-14, Organism=Drosophila melanogaster, GI24650996, Length=124, Percent_Identity=38.7096774193548, Blast_Score=78, Evalue=2e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002912 - InterPro: IPR012675 - InterPro: IPR003607 - InterPro: IPR007685 - InterPro: IPR004811 - InterPro: IPR004095 - InterPro: IPR012676 [H]
Pfam domain/function: PF01842 ACT; PF04607 RelA_SpoT; PF02824 TGS [H]
EC number: =2.7.6.5 [H]
Molecular weight: Translated: 83853; Mature: 83853
Theoretical pI: Translated: 6.38; Mature: 6.38
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRQYELVERVQKYKPDANEALLNKAYVYAMQKHGQQKRANGDPYISHPLEVAAILTEMH CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHH LDESTIAVALLHDTIEDTTATRAEIDELFGEDIGRLVEGLTKLKKLDLVTRKAKQAENLR CCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLLAISDDVRVLLVKLADRLHNMRTMEYMPADKRSRISEETMEIYAPLAGRMGMQDMRD HHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH ELEDLSFRYLNPEAYETVTNRLLELETRNEGLIKKIEDELRELLVANGLLGTHVKGRQKK HHHHCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PYSVFRKMQSKSLSFEQLSDVYGFRILVDDIPGCYRALGIVHTRWRVVPGRFKDYISTPK CHHHHHHHHHCCCCHHHHHHHHCEEEEECCCCHHHHHHHHHHHHEEECCCHHHHHHCCCC QNDYRSIHTTIVGPSRQRIELQIRTKRMHEIAEFGIAAHALYKDGENGEGDLLSKESNAY CCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH SWLRHTIESLAEGDSPEEFLEHTKLELFQDQVFCFTPKGKLIALPRGATPIDFAYAVHTN HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCEEEEEEECC IGDTTVGAKINGRIMPLVTRLNNGDEVEIIRSGVQVPPAAWEEVVVTGKARSAIRRATRM CCCCEECCEECCEEEEEEEECCCCCEEHHHHCCCCCCCCCHHHEEEECHHHHHHHHHHHH AIRKQYSGLGYRILERTFERAGKAFSREALKPVLHRLAQKDVEDAIAAVGRGEVSSLDVL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RAVFPDYQDERVTVKMTGDDGWFNMRSASGMVFKIPGKSRSVLEDDGAAEMLDGPDPLPI HHHCCCCCCCEEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCC RGLSGNVDVHFSAAGAVPGDRIVGIMEKGKGITIYPIQAPALQRFDDEPERWIDVRWDLD CCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCHHHHHCCCCCCCEEEEEECCC EANKSRFMARVMINALNEPGTLASVAQSIATLDVNIRGLNMVRIGTDFSELALDVEVWDL CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEEEEEEEEECCCHHHHEEEHHHHHH RQLNQLLSQLKDLDCVSTVARAFD HHHHHHHHHHHCCHHHHHHHHHCC >Mature Secondary Structure MMRQYELVERVQKYKPDANEALLNKAYVYAMQKHGQQKRANGDPYISHPLEVAAILTEMH CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHH LDESTIAVALLHDTIEDTTATRAEIDELFGEDIGRLVEGLTKLKKLDLVTRKAKQAENLR CCCHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLLLAISDDVRVLLVKLADRLHNMRTMEYMPADKRSRISEETMEIYAPLAGRMGMQDMRD HHHHHHCCCHHHHHHHHHHHHHCCHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHH ELEDLSFRYLNPEAYETVTNRLLELETRNEGLIKKIEDELRELLVANGLLGTHVKGRQKK HHHHCCEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC PYSVFRKMQSKSLSFEQLSDVYGFRILVDDIPGCYRALGIVHTRWRVVPGRFKDYISTPK CHHHHHHHHHCCCCHHHHHHHHCEEEEECCCCHHHHHHHHHHHHEEECCCHHHHHHCCCC QNDYRSIHTTIVGPSRQRIELQIRTKRMHEIAEFGIAAHALYKDGENGEGDLLSKESNAY CCCCCEEEEEEECCCCCEEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH SWLRHTIESLAEGDSPEEFLEHTKLELFQDQVFCFTPKGKLIALPRGATPIDFAYAVHTN HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCCEEEECCCCCCCEEEEEEECC IGDTTVGAKINGRIMPLVTRLNNGDEVEIIRSGVQVPPAAWEEVVVTGKARSAIRRATRM CCCCEECCEECCEEEEEEEECCCCCEEHHHHCCCCCCCCCHHHEEEECHHHHHHHHHHHH AIRKQYSGLGYRILERTFERAGKAFSREALKPVLHRLAQKDVEDAIAAVGRGEVSSLDVL HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHH RAVFPDYQDERVTVKMTGDDGWFNMRSASGMVFKIPGKSRSVLEDDGAAEMLDGPDPLPI HHHCCCCCCCEEEEEEECCCCCEEEECCCCEEEECCCCCCCCCCCCCCHHHCCCCCCCCC RGLSGNVDVHFSAAGAVPGDRIVGIMEKGKGITIYPIQAPALQRFDDEPERWIDVRWDLD CCCCCCEEEEEEECCCCCCCCEEEEEECCCCEEEEECCCHHHHHCCCCCCCEEEEEECCC EANKSRFMARVMINALNEPGTLASVAQSIATLDVNIRGLNMVRIGTDFSELALDVEVWDL CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHEEEEEEEEEEEEECCCHHHHEEEHHHHHH RQLNQLLSQLKDLDCVSTVARAFD HHHHHHHHHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA