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The map label for this gene is rnpO

Identifier: 159184585

GI number: 159184585

Start: 1022139

End: 1022528

Strand: Direct

Name: rnpO

Synonym: Atu1029

Alternate gene names: 159184585

Gene position: 1022139-1022528 (Clockwise)

Preceding gene: 159184583

Following gene: 159184586

Centisome position: 35.97

GC content: 57.95

Gene sequence:

>390_bases
ATGGCCCGCGTCACAGTTGAAGATTGCATTGATAAAGTAGACAACCGTTTCGAGCTGGTGCTTCTCGCGAGCCACCGTGC
GCGCCAGATTTCTCAAGGGTCCTCCATCACGGTTGACCGCGACAACGACAAGAACCCTGTCGTGGCGCTGCGCGAAATCG
CCGACGAGACCCTGTCTCCCGACGACCTGAAGGAAGACCTCATCCATTCGCTGCAGAAGCATGTGGAAGTGGACGAGCCC
GAGCCCGATCCGGTCACGCTCGCCGCCTCCGCTGCCGATGGCGAAGACGATGATCAGCCGGAAACCGTTACTTTCGACCA
GATGTCGGAAGAAGAACTGCTGGCCGGTATCGAAGGCCTTGTGCCGCCGGAAAAAAATGACGACTATTGA

Upstream 100 bases:

>100_bases
GGCACGAAGCGCAGATTCAATAGGTTAGAGCATCCCTTGTGCATCCCAAAGAAAGCACGGCGCTCTGATCCACGACATTA
CGACTCGCAAAGGACAGGCA

Downstream 100 bases:

>100_bases
TCCGGTTTTATGATGCCTTTGGCAGGCGGTGGTTACCGTCTGTCAATAGTTGCCGTCATAATCTGATCCCTATTGATGCA
GCATTGTGCGCCGACCCCAA

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEP
EPDPVTLAASAADGEDDDQPETVTFDQMSEEELLAGIEGLVPPEKNDDY

Sequences:

>Translated_129_residues
MARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEP
EPDPVTLAASAADGEDDDQPETVTFDQMSEEELLAGIEGLVPPEKNDDY
>Mature_128_residues
ARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDKNPVVALREIADETLSPDDLKEDLIHSLQKHVEVDEPE
PDPVTLAASAADGEDDDQPETVTFDQMSEEELLAGIEGLVPPEKNDDY

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

Organism=Escherichia coli, GI1790081, Length=54, Percent_Identity=55.5555555555556, Blast_Score=60, Evalue=7e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_AGRT5 (Q8UGK8)

Other databases:

- EMBL:   AE007869
- PIR:   AD2703
- PIR:   D97485
- RefSeq:   NP_354052.2
- STRING:   Q8UGK8
- GeneID:   1133067
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1029
- eggNOG:   COG1758
- HOGENOM:   HBG742204
- OMA:   KVDNRFE
- PhylomeDB:   Q8UGK8
- ProtClustDB:   PRK00392
- BioCyc:   ATUM176299-1:ATU1029-MONOMER
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14297; Mature: 14166

Theoretical pI: Translated: 3.85; Mature: 3.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDKNPVVALREIADETLSP
CCCCCHHHHHHHHCCCEEEEEECCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
DDLKEDLIHSLQKHVEVDEPEPDPVTLAASAADGEDDDQPETVTFDQMSEEELLAGIEGL
CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCC
VPPEKNDDY
CCCCCCCCC
>Mature Secondary Structure 
ARVTVEDCIDKVDNRFELVLLASHRARQISQGSSITVDRDNDKNPVVALREIADETLSP
CCCCHHHHHHHHCCCEEEEEECCHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHCCCC
DDLKEDLIHSLQKHVEVDEPEPDPVTLAASAADGEDDDQPETVTFDQMSEEELLAGIEGL
CHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCC
VPPEKNDDY
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194