Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184584
Identifier: 159184584
GI number: 159184584
Start: 1021177
End: 1021746
Strand: Reverse
Name: 159184584
Synonym: Atu1028
Alternate gene names: NA
Gene position: 1021746-1021177 (Counterclockwise)
Preceding gene: 159184590
Following gene: 15888368
Centisome position: 35.96
GC content: 57.89
Gene sequence:
>570_bases ATGTTCGATCCACGGGAGAAAATTGCGCTCTTCATAGACGGAGCCAATCTTTATGCAGCATCGAAAAGCCTGGGGTTCGA TATCGACTATCGCAAGCTTCTGAAGGCGTTTCAGAAGCGTGGCTATCTGCTGCGCGCCTATTATTACACCGCGCTTATCG AGGATCAGGAATATTCCTCGATCCGTCCGCTGATCGACTGGCTGGACTATAACGGCTACAAGGTCGTGACGAAGCCGGCG AAGGAATTCACCGACGCGCTCGGCCGCCGCAAGATCAAGGGCAACATGGATATCGAACTCGCAGTCGATGCCATGGAACA GTCCGAGACGGTCGATCACCTGGTTCTGTTCTCGGGCGACGGCGATTTCACCACGCTGGTGGACGCGCTGCAGCGCAAGG GCCGCAAGGTCTCCGTTGTTTCAACCATGGCCACACAGCCCGCCATGATCGCCGACGACCTGCGCCGCCAGGCTGACCAC TTCATCGATCTGATGACACTGAAGGCCGAAATCGGGCGCGATCCGAGCGAGCGCCCTGTGCGTCACGCTGAAGGTCCGGA GACGGTCTGA
Upstream 100 bases:
>100_bases CGGCGCACCGTAAAATTCGTTGATACCACATGATTTTTTGCATTTGCGACCGGAAATAAAAGCCAGATAATGGCCTTTCC AAAAAAAGGAATGGGATGGA
Downstream 100 bases:
>100_bases TACCGGTTCAGGCACCGCTGACTTTTAAAACGCGTCCGTTGAAAAACGGGCGCGTTTTTGTTTGTGCCGACGGCCGGAGT AAAATTTGCATTTAAACTTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MFDPREKIALFIDGANLYAASKSLGFDIDYRKLLKAFQKRGYLLRAYYYTALIEDQEYSSIRPLIDWLDYNGYKVVTKPA KEFTDALGRRKIKGNMDIELAVDAMEQSETVDHLVLFSGDGDFTTLVDALQRKGRKVSVVSTMATQPAMIADDLRRQADH FIDLMTLKAEIGRDPSERPVRHAEGPETV
Sequences:
>Translated_189_residues MFDPREKIALFIDGANLYAASKSLGFDIDYRKLLKAFQKRGYLLRAYYYTALIEDQEYSSIRPLIDWLDYNGYKVVTKPA KEFTDALGRRKIKGNMDIELAVDAMEQSETVDHLVLFSGDGDFTTLVDALQRKGRKVSVVSTMATQPAMIADDLRRQADH FIDLMTLKAEIGRDPSERPVRHAEGPETV >Mature_189_residues MFDPREKIALFIDGANLYAASKSLGFDIDYRKLLKAFQKRGYLLRAYYYTALIEDQEYSSIRPLIDWLDYNGYKVVTKPA KEFTDALGRRKIKGNMDIELAVDAMEQSETVDHLVLFSGDGDFTTLVDALQRKGRKVSVVSTMATQPAMIADDLRRQADH FIDLMTLKAEIGRDPSERPVRHAEGPETV
Specific function: Unknown
COG id: COG1432
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 21487; Mature: 21487
Theoretical pI: Translated: 5.78; Mature: 5.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFDPREKIALFIDGANLYAASKSLGFDIDYRKLLKAFQKRGYLLRAYYYTALIEDQEYSS CCCCCCEEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH IRPLIDWLDYNGYKVVTKPAKEFTDALGRRKIKGNMDIELAVDAMEQSETVDHLVLFSGD HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEHHHHHCCCCEEEEEECC GDFTTLVDALQRKGRKVSVVSTMATQPAMIADDLRRQADHFIDLMTLKAEIGRDPSERPV CCHHHHHHHHHHCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC RHAEGPETV CCCCCCCCC >Mature Secondary Structure MFDPREKIALFIDGANLYAASKSLGFDIDYRKLLKAFQKRGYLLRAYYYTALIEDQEYSS CCCCCCEEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEHHHHHCCCCCHHH IRPLIDWLDYNGYKVVTKPAKEFTDALGRRKIKGNMDIELAVDAMEQSETVDHLVLFSGD HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCCCCCCCEEEEEEHHHHHCCCCEEEEEECC GDFTTLVDALQRKGRKVSVVSTMATQPAMIADDLRRQADHFIDLMTLKAEIGRDPSERPV CCHHHHHHHHHHCCCEEEEEEHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC RHAEGPETV CCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA