Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184549
Identifier: 159184549
GI number: 159184549
Start: 940766
End: 941974
Strand: Direct
Name: 159184549
Synonym: Atu0951
Alternate gene names: NA
Gene position: 940766-941974 (Clockwise)
Preceding gene: 159185419
Following gene: 159185431
Centisome position: 33.11
GC content: 66.42
Gene sequence:
>1209_bases CTGCGCGACTGGCGTTTCATCGGCAACCTGCCGCAGCAGGCGCCGGAGGGTGAGTGGCGGACATGGCTGCTGATCGGCGG ACGTGGTTCCGGCAAGACCCGCGCCGGGGCCGAATGGGTGCACGCCGTTGCTTCCGCCGGCAAACAGTCGGATCTGCGCA TCGCGCTGGTGGCTGAAACACTGGGCGATGCCCGCGAGGTGATGATCGACGGCATTTCCGGCATCTGCCGCATTGCCCGC CGCCATCGTCCCGCCTTCGAAGTGTCGCGCCGCCGGCTCCTCTGGCCGAATGGCGCGATGGCGCAGGTATTTTCCTCGGA GGACCCGGAAAGCCTGCGCGGCCCGCAATTTCACTTGGCCTGGTCGGATGAGCTGGGCAAATGGAAATATCCGCAGGAAA CCTGGGACATGCTGCAATTTGGCCTTCGCCTGGGCGAGATGCCACGGCAACTGGTGACCACCACGCCGCGGCCCATCCCG CTGCTGAAGGCGTTGCTTTCTGATCCGACAAGCCGGGTGGCGCGGATGCCGACGGCGATGAATGCGCAGAACCTGTCGCC CGGTTTCCTGAAGGCCATGCAGGAGCGGTACGGCGGCACGCGGCTCGGCCGTCAGGAAATCGGCGGCGAGTTGATCGATG AGCGCGAAGGCGCGCTGTGGAAACGCGCCGATTTGGAAGCGATCATCGAGGCGGCGCATGAGCCGTTATCGCGCATCGTG GTGGCAGTCGATCCGCCTGCCGGTGTGGGAGAGAATTCCTGCTGCGGCATCGTTGTGGCGGGGCTTGGCATGTCCGGGCG GCTTGTGGTGCTGGCGGATTGTTCGGTGGAGGGTGAAACACCAGCGGGCTGGGCGCGCGCCGTGGTCGCCGCCTTCCGCC GCCACGAGGCGGACCGGGTGGTGGCCGAGGTCAACCAGGGTGGCGAAATGGTGCGGGCCATGCTGCAGAGCATAGATGCC AACCTGCCACTGACGCTGGTGCGCGCCAGCCGCGGCAAATTCACCCGCGCCGAGCCCGTCGCGGCACTCTACGAGCAGGG CCGGGTGCGCCATTCGGGGAGATTTGAAAAGCTGGAGGACCAGATGACGGATTTCGGGCCCGATGGCCTGTCATCCGGGC GTTCGCCAGACAGGCTGGACGCGCTCGTCTGGGCGATCACGGCACTGACGACGATGGTGGTGAATGAGCCGAGGGTGCGG GGGATGTGA
Upstream 100 bases:
>100_bases GCTGGAGGCGATCGCTGCGTTGGGCACTTCCGTCGGGTCTGGCTGAGGCATGGCGGAATTTTTGACTGAAACCCGCTTGC AGGGACAGGTCTTCAACCTC
Downstream 100 bases:
>100_bases GCTGGTGATTTCGGGCCTGCGAGCAGGGCTATCGAACCGCAAACAAGCGGGTGCCGCATGTTTCTTCTCCCCGGCGGGGA GAAGAAATCTTCGGCACCGC
Product: large terminase phage packaging protein
Products: NA
Alternate protein names: Large Terminase; Terminase Large Subunit; Large Terminase Phage Packaging Protein; Terminase-Like Family Protein; Phage Protein-Like
Number of amino acids: Translated: 402; Mature: 402
Protein sequence:
>402_residues MRDWRFIGNLPQQAPEGEWRTWLLIGGRGSGKTRAGAEWVHAVASAGKQSDLRIALVAETLGDAREVMIDGISGICRIAR RHRPAFEVSRRRLLWPNGAMAQVFSSEDPESLRGPQFHLAWSDELGKWKYPQETWDMLQFGLRLGEMPRQLVTTTPRPIP LLKALLSDPTSRVARMPTAMNAQNLSPGFLKAMQERYGGTRLGRQEIGGELIDEREGALWKRADLEAIIEAAHEPLSRIV VAVDPPAGVGENSCCGIVVAGLGMSGRLVVLADCSVEGETPAGWARAVVAAFRRHEADRVVAEVNQGGEMVRAMLQSIDA NLPLTLVRASRGKFTRAEPVAALYEQGRVRHSGRFEKLEDQMTDFGPDGLSSGRSPDRLDALVWAITALTTMVVNEPRVR GM
Sequences:
>Translated_402_residues MRDWRFIGNLPQQAPEGEWRTWLLIGGRGSGKTRAGAEWVHAVASAGKQSDLRIALVAETLGDAREVMIDGISGICRIAR RHRPAFEVSRRRLLWPNGAMAQVFSSEDPESLRGPQFHLAWSDELGKWKYPQETWDMLQFGLRLGEMPRQLVTTTPRPIP LLKALLSDPTSRVARMPTAMNAQNLSPGFLKAMQERYGGTRLGRQEIGGELIDEREGALWKRADLEAIIEAAHEPLSRIV VAVDPPAGVGENSCCGIVVAGLGMSGRLVVLADCSVEGETPAGWARAVVAAFRRHEADRVVAEVNQGGEMVRAMLQSIDA NLPLTLVRASRGKFTRAEPVAALYEQGRVRHSGRFEKLEDQMTDFGPDGLSSGRSPDRLDALVWAITALTTMVVNEPRVR GM >Mature_402_residues MRDWRFIGNLPQQAPEGEWRTWLLIGGRGSGKTRAGAEWVHAVASAGKQSDLRIALVAETLGDAREVMIDGISGICRIAR RHRPAFEVSRRRLLWPNGAMAQVFSSEDPESLRGPQFHLAWSDELGKWKYPQETWDMLQFGLRLGEMPRQLVTTTPRPIP LLKALLSDPTSRVARMPTAMNAQNLSPGFLKAMQERYGGTRLGRQEIGGELIDEREGALWKRADLEAIIEAAHEPLSRIV VAVDPPAGVGENSCCGIVVAGLGMSGRLVVLADCSVEGETPAGWARAVVAAFRRHEADRVVAEVNQGGEMVRAMLQSIDA NLPLTLVRASRGKFTRAEPVAALYEQGRVRHSGRFEKLEDQMTDFGPDGLSSGRSPDRLDALVWAITALTTMVVNEPRVR GM
Specific function: Unknown
COG id: COG5323
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44184; Mature: 44184
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDWRFIGNLPQQAPEGEWRTWLLIGGRGSGKTRAGAEWVHAVASAGKQSDLRIALVAET CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHH LGDAREVMIDGISGICRIARRHRPAFEVSRRRLLWPNGAMAQVFSSEDPESLRGPQFHLA HCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEECCCCHHHHHHCCCCCHHHCCCEEEEE WSDELGKWKYPQETWDMLQFGLRLGEMPRQLVTTTPRPIPLLKALLSDPTSRVARMPTAM ECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCC NAQNLSPGFLKAMQERYGGTRLGRQEIGGELIDEREGALWKRADLEAIIEAAHEPLSRIV CCCCCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHCCHHEEE VAVDPPAGVGENSCCGIVVAGLGMSGRLVVLADCSVEGETPAGWARAVVAAFRRHEADRV EEECCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH VAEVNQGGEMVRAMLQSIDANLPLTLVRASRGKFTRAEPVAALYEQGRVRHSGRFEKLED HHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHH QMTDFGPDGLSSGRSPDRLDALVWAITALTTMVVNEPRVRGM HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MRDWRFIGNLPQQAPEGEWRTWLLIGGRGSGKTRAGAEWVHAVASAGKQSDLRIALVAET CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEEEEHHH LGDAREVMIDGISGICRIARRHRPAFEVSRRRLLWPNGAMAQVFSSEDPESLRGPQFHLA HCHHHHHHHHHHHHHHHHHHHCCCHHHHCCCEEECCCCHHHHHHCCCCCHHHCCCEEEEE WSDELGKWKYPQETWDMLQFGLRLGEMPRQLVTTTPRPIPLLKALLSDPTSRVARMPTAM ECCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHHHCCHHHHHHHCCCCC NAQNLSPGFLKAMQERYGGTRLGRQEIGGELIDEREGALWKRADLEAIIEAAHEPLSRIV CCCCCCHHHHHHHHHHHCCCCCCHHHHCCHHHHHHCCCHHHHHHHHHHHHHHHCCHHEEE VAVDPPAGVGENSCCGIVVAGLGMSGRLVVLADCSVEGETPAGWARAVVAAFRRHEADRV EEECCCCCCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHH VAEVNQGGEMVRAMLQSIDANLPLTLVRASRGKFTRAEPVAALYEQGRVRHSGRFEKLED HHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCHHHHHH QMTDFGPDGLSSGRSPDRLDALVWAITALTTMVVNEPRVRGM HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA