Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is pemI [H]
Identifier: 159184540
GI number: 159184540
Start: 928967
End: 929233
Strand: Direct
Name: pemI [H]
Synonym: Atu0939
Alternate gene names: 159184540
Gene position: 928967-929233 (Clockwise)
Preceding gene: 159184539
Following gene: 159184541
Centisome position: 32.69
GC content: 59.55
Gene sequence:
>267_bases ATGACCGTGACCACGAAAATAAGACGCCAGGGCGGCGCGGCGGTGATGACGATCCCGCCCGCTCTTTTGAAGATGCTGGG GCTGGAAATCGGTGAGCAACTGACGCTCGAGGTCGATAATGGCGCTCTGGTGGCAAGCCCGGTTCGACTGGAAAAGAAAC GCTTCACGCTGGCCGAATTACTGGATGGTGCAGAGGAAGTGGCAGCTCTAAACGCCAGGGAGCGGGCGTGGGACACAGCG CCTCCTGTCGGCAAAGAAGCGTTGTGA
Upstream 100 bases:
>100_bases AGCCGGTTATTCGCCCGAACGGGCGGGCTGAAATGCGGCTTCTGTTTGCGCAAATGTGAAAATGTGCTACATATGTTGCA CAATGCAGGAGCGCAGACGG
Downstream 100 bases:
>100_bases TGGTCCGCAACCAGATCCCCAAGCGCGGCGACGTTTATCTGGTTGATCTAAACCCTGTCGTAGGCAGCGAAATCAAGGAC GAACATCGCTGTGTCGTCAT
Product: PemI protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 88; Mature: 87
Protein sequence:
>88_residues MTVTTKIRRQGGAAVMTIPPALLKMLGLEIGEQLTLEVDNGALVASPVRLEKKRFTLAELLDGAEEVAALNARERAWDTA PPVGKEAL
Sequences:
>Translated_88_residues MTVTTKIRRQGGAAVMTIPPALLKMLGLEIGEQLTLEVDNGALVASPVRLEKKRFTLAELLDGAEEVAALNARERAWDTA PPVGKEAL >Mature_87_residues TVTTKIRRQGGAAVMTIPPALLKMLGLEIGEQLTLEVDNGALVASPVRLEKKRFTLAELLDGAEEVAALNARERAWDTAP PVGKEAL
Specific function: Responsible for the stable maintenance of the plasmid during cell division. Both PemI and PemK proteins bind to the promoter region of the pem operon to autoregulate their synthesis [H]
COG id: COG2336
COG function: function code T; Growth regulator
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the PemI family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007159 [H]
Pfam domain/function: PF04014 SpoVT_AbrB [H]
EC number: NA
Molecular weight: Translated: 9423; Mature: 9292
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTVTTKIRRQGGAAVMTIPPALLKMLGLEIGEQLTLEVDNGALVASPVRLEKKRFTLAEL CCCCCCCCCCCCCEEEEECHHHHHHHHHCCCCEEEEEECCCEEEECCCHHHHHHHHHHHH LDGAEEVAALNARERAWDTAPPVGKEAL HCCHHHHHHHCCHHHCCCCCCCCCCCCC >Mature Secondary Structure TVTTKIRRQGGAAVMTIPPALLKMLGLEIGEQLTLEVDNGALVASPVRLEKKRFTLAEL CCCCCCCCCCCCEEEEECHHHHHHHHHCCCCEEEEEECCCEEEECCCHHHHHHHHHHHH LDGAEEVAALNARERAWDTAPPVGKEAL HCCHHHHHHHCCHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3019092; 3323833; 2832364; 8455570 [H]