Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184532
Identifier: 159184532
GI number: 159184532
Start: 913645
End: 914193
Strand: Reverse
Name: 159184532
Synonym: Atu0925
Alternate gene names: NA
Gene position: 914193-913645 (Counterclockwise)
Preceding gene: 15888265
Following gene: 159184531
Centisome position: 32.17
GC content: 61.93
Gene sequence:
>549_bases ATGCTTAGGATCCTGCTCGCCATCATCACCGGCCTCGTTGCCGCCGCCGTGCTGCATGTCATCGTCATTCTGGCGATACC GCATTTCAGCAATCGCGACGCCTATACGCGGGCGCTGGCGGAAGGAAGACCGCATCTGTTTCATCTGCTCGAGGAGACGA CGGAGAAAAAGACCCTCGGCAGCGGCGATCCCTTCATGCGGGTGGCCGTCTGCACCTTCAATATCGAGGAACAGCCGGTC CGGCTCACCGCCATCGGCGCCGTGCCCTTCTGGTCGGTCGCGGTTTACGACAAGGCTTCGAACGAGGTGTTCAGCATGAA CGACCGCACGTCCGCCGGCGGCGAGATGGATATTCTGGTGGCCGATGCGGTGCAGATCGCCGCTATCCGCAAGGCGCAGC CTCCCGCGCTCTCTCAGGCCATTCTGGCGGAATCGGATCAGACGGAAGGGTATGTGGTGTTGCGAACCATGGTGCCGCAG CCGAGTTTCGGCGAAGAGGCGGAGCGGTTCCTGAACGAGGCGAAATGCCAGCCGACGCCGTGGAAATAA
Upstream 100 bases:
>100_bases ACCTTCAAACTCGTCATGACGCTGCTCGATACGCCGGTTGCCGGTAGTTCCGGCCTGATCGACATTTCCATGCCGCAGAT CCGCAAGCTGGGGTGTGGCA
Downstream 100 bases:
>100_bases CGTCGGTTCATCGTCGATAATCAGGACTTGAGGGCAGTCTCCGCTGCGGATTTGCCCTTGTGCGCGACTTTTCCGGTCGG TTCGGTATCGCGTTTCTCAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 182; Mature: 182
Protein sequence:
>182_residues MLRILLAIITGLVAAAVLHVIVILAIPHFSNRDAYTRALAEGRPHLFHLLEETTEKKTLGSGDPFMRVAVCTFNIEEQPV RLTAIGAVPFWSVAVYDKASNEVFSMNDRTSAGGEMDILVADAVQIAAIRKAQPPALSQAILAESDQTEGYVVLRTMVPQ PSFGEEAERFLNEAKCQPTPWK
Sequences:
>Translated_182_residues MLRILLAIITGLVAAAVLHVIVILAIPHFSNRDAYTRALAEGRPHLFHLLEETTEKKTLGSGDPFMRVAVCTFNIEEQPV RLTAIGAVPFWSVAVYDKASNEVFSMNDRTSAGGEMDILVADAVQIAAIRKAQPPALSQAILAESDQTEGYVVLRTMVPQ PSFGEEAERFLNEAKCQPTPWK >Mature_182_residues MLRILLAIITGLVAAAVLHVIVILAIPHFSNRDAYTRALAEGRPHLFHLLEETTEKKTLGSGDPFMRVAVCTFNIEEQPV RLTAIGAVPFWSVAVYDKASNEVFSMNDRTSAGGEMDILVADAVQIAAIRKAQPPALSQAILAESDQTEGYVVLRTMVPQ PSFGEEAERFLNEAKCQPTPWK
Specific function: Unknown
COG id: COG5436
COG function: function code S; Predicted integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19931; Mature: 19931
Theoretical pI: Translated: 5.26; Mature: 5.26
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRILLAIITGLVAAAVLHVIVILAIPHFSNRDAYTRALAEGRPHLFHLLEETTEKKTLG CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC SGDPFMRVAVCTFNIEEQPVRLTAIGAVPFWSVAVYDKASNEVFSMNDRTSAGGEMDILV CCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCEEECCCCCCCCCCEEEEE ADAVQIAAIRKAQPPALSQAILAESDQTEGYVVLRTMVPQPSFGEEAERFLNEAKCQPTP HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCC WK CC >Mature Secondary Structure MLRILLAIITGLVAAAVLHVIVILAIPHFSNRDAYTRALAEGRPHLFHLLEETTEKKTLG CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC SGDPFMRVAVCTFNIEEQPVRLTAIGAVPFWSVAVYDKASNEVFSMNDRTSAGGEMDILV CCCCEEEEEEEEECCCCCCEEEEEEECCCCEEEEEEECCCCCEEECCCCCCCCCCEEEEE ADAVQIAAIRKAQPPALSQAILAESDQTEGYVVLRTMVPQPSFGEEAERFLNEAKCQPTP HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCCCC WK CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA