Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yieO [C]
Identifier: 159184489
GI number: 159184489
Start: 836902
End: 838425
Strand: Direct
Name: yieO [C]
Synonym: Atu0838
Alternate gene names: 159184489
Gene position: 836902-838425 (Clockwise)
Preceding gene: 159184487
Following gene: 159184490
Centisome position: 29.45
GC content: 62.99
Gene sequence:
>1524_bases ATGTCCACCGCCCCCGTGGCGCCGCTTGTGTCGGATCACCGCCGCAGGCTCATCGTTTTTCTGTTTCTGATGCTGGCCAT GTTCATGGCCACACTCGACAACCAGATCGTCTCGACAGCGCTCCCCACCATCGTCGGTGAATTCGGCGCGCTGGAGCGTT TCGGCTGGATTGGCTCGGCCTATCTTCTGGCGACCAGCGCGGTCATGCCCGTTTATGGCAAGCTCGGTGATCTCTTCGGC CGCAAATATGTGATGATTGCGGCGGTCGTCATCTTCACGCTCGGTTCGCTCGCCTGCGGGCTGGCATGGTCTATGGACAG CCTGATCGCGGCCCGTGTGCTTCAAGGGCTTGGCGGCGGCGGCATCATGGTGTCGATCTTCTCCGTTAATGCGGATCTGT TCGAGCCACGCGAGCGCGCCCGCTACCAAAGCTATTCCAGCCTCACCATCATGGCCTCGGGCAGTGTCGGCCCGATTCTC GGCGGGACCATGAGCGACCTGTTCGGCTGGCGGTCGATCTTCCTTATCAATCTGCCGCTCGGTATTATCGTCATCGCCGG CCTTGCTCTCATGCTGCCCTATCGTCGCCCGGCGAGACAGCCAAAGATCGATTATCTCGGTGCGGTTCTTCTGGCCGCCA CCATTGCCAGCGTGGTGTTCTGGGCCGATAGCAGCGAACTGTTCGGCTCGCTGATCGCGGCCCCAAGCCTCGGCATCATC GCCTTTGCCGTCATCGCCGCTTTCCTGTGGGTGCAGGTGGAGCGTCGCGCGCCGGAACCCGTCGTGCCGCTGCGTCTCTT CAAGGACAGCACCTTTCCGCTGTTGATGATCGTCTCGCTGACCAGCGGCGGCATCGGTATCGGCATGGTCAATTATTACG CGCTGTTCCTGCAGACCACGACCGGGCTTTCGCCCTCCCATGCCGGCCTGTTCTTCATCGCCGTCACCGGCGGCATCGTC ATGGGTTCGTTGTCTGCCGGACGGCTGATCTCGATTACCGGCGTCTACAAGCCCTTCTCGGTGGCCGGCCTCACCATCAA TGTCCTCGTCATGCTGCTCTTCACGCAGATGCATGCCGGAACGCCGCTTTGGCTGATCGCGGTGCTGATGCTGGCGCAGG GTTTCGCCGTCGGCCTCGGCCAGCAGGCACCCATCATCGGCGTACAGAACTCCGCTCCGAAGGCCGATATCGGCGCGGCA AGCGGCGCGGTGACCCTGACCCGCATGGGCGGCGCCGCCATCGCCATCTCGGTCTATGGCGCCATCGTGTCATCAAGCTT GAAAGGTGTCGCGATCGATATTCCCGGTGTCGGCAGGATCGAGGAACTGACGCCGAAAATGCTCGCCGAACTGCCCGCAA CCTCCCAGGCCGCCGTCGCCTCGCTTTATTCGGATGCGTTTACGCCGCTATTCTTCGCGGCCGCCGCCACCGCCGCGATT GGTCTTGCCGCGGCGTTGATGCTGAAACCGGTGCGCCTGCCGGCGGCGGTTGAAGCGAAGCCGGCGGAAGCAGCGGGAGA GTAG
Upstream 100 bases:
>100_bases ATAGCACAGATGTCAAAAACTTGCCATTGACATATATATGCCAATAGCACACAAATTGTCGCAGCAAAATCGCCGGAACT CAACGAGATTTTTCATGGAT
Downstream 100 bases:
>100_bases GAACGATTGCACGAAGGTGTGTCGGTTCCCGCGTGCACTTTCGTCCGTCTGCTCGCTCTTCCCTCATCCCTGTGCCTGTC ACAGGGATCCAGCCAGCCCA
Product: MFS permease
Products: Proton [Cytoplasm]; drug [Periplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 507; Mature: 506
Protein sequence:
>507_residues MSTAPVAPLVSDHRRRLIVFLFLMLAMFMATLDNQIVSTALPTIVGEFGALERFGWIGSAYLLATSAVMPVYGKLGDLFG RKYVMIAAVVIFTLGSLACGLAWSMDSLIAARVLQGLGGGGIMVSIFSVNADLFEPRERARYQSYSSLTIMASGSVGPIL GGTMSDLFGWRSIFLINLPLGIIVIAGLALMLPYRRPARQPKIDYLGAVLLAATIASVVFWADSSELFGSLIAAPSLGII AFAVIAAFLWVQVERRAPEPVVPLRLFKDSTFPLLMIVSLTSGGIGIGMVNYYALFLQTTTGLSPSHAGLFFIAVTGGIV MGSLSAGRLISITGVYKPFSVAGLTINVLVMLLFTQMHAGTPLWLIAVLMLAQGFAVGLGQQAPIIGVQNSAPKADIGAA SGAVTLTRMGGAAIAISVYGAIVSSSLKGVAIDIPGVGRIEELTPKMLAELPATSQAAVASLYSDAFTPLFFAAAATAAI GLAAALMLKPVRLPAAVEAKPAEAAGE
Sequences:
>Translated_507_residues MSTAPVAPLVSDHRRRLIVFLFLMLAMFMATLDNQIVSTALPTIVGEFGALERFGWIGSAYLLATSAVMPVYGKLGDLFG RKYVMIAAVVIFTLGSLACGLAWSMDSLIAARVLQGLGGGGIMVSIFSVNADLFEPRERARYQSYSSLTIMASGSVGPIL GGTMSDLFGWRSIFLINLPLGIIVIAGLALMLPYRRPARQPKIDYLGAVLLAATIASVVFWADSSELFGSLIAAPSLGII AFAVIAAFLWVQVERRAPEPVVPLRLFKDSTFPLLMIVSLTSGGIGIGMVNYYALFLQTTTGLSPSHAGLFFIAVTGGIV MGSLSAGRLISITGVYKPFSVAGLTINVLVMLLFTQMHAGTPLWLIAVLMLAQGFAVGLGQQAPIIGVQNSAPKADIGAA SGAVTLTRMGGAAIAISVYGAIVSSSLKGVAIDIPGVGRIEELTPKMLAELPATSQAAVASLYSDAFTPLFFAAAATAAI GLAAALMLKPVRLPAAVEAKPAEAAGE >Mature_506_residues STAPVAPLVSDHRRRLIVFLFLMLAMFMATLDNQIVSTALPTIVGEFGALERFGWIGSAYLLATSAVMPVYGKLGDLFGR KYVMIAAVVIFTLGSLACGLAWSMDSLIAARVLQGLGGGGIMVSIFSVNADLFEPRERARYQSYSSLTIMASGSVGPILG GTMSDLFGWRSIFLINLPLGIIVIAGLALMLPYRRPARQPKIDYLGAVLLAATIASVVFWADSSELFGSLIAAPSLGIIA FAVIAAFLWVQVERRAPEPVVPLRLFKDSTFPLLMIVSLTSGGIGIGMVNYYALFLQTTTGLSPSHAGLFFIAVTGGIVM GSLSAGRLISITGVYKPFSVAGLTINVLVMLLFTQMHAGTPLWLIAVLMLAQGFAVGLGQQAPIIGVQNSAPKADIGAAS GAVTLTRMGGAAIAISVYGAIVSSSLKGVAIDIPGVGRIEELTPKMLAELPATSQAAVASLYSDAFTPLFFAAAATAAIG LAAALMLKPVRLPAAVEAKPAEAAGE
Specific function: Unknown
COG id: COG0477
COG function: function code GEPR; Permeases of the major facilitator superfamily
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. TCR/tet family [H]
Homologues:
Organism=Escherichia coli, GI1790195, Length=453, Percent_Identity=30.0220750551876, Blast_Score=112, Evalue=6e-26, Organism=Escherichia coli, GI1788392, Length=307, Percent_Identity=34.8534201954397, Blast_Score=105, Evalue=8e-24, Organism=Escherichia coli, GI87081983, Length=308, Percent_Identity=29.2207792207792, Blast_Score=105, Evalue=9e-24, Organism=Escherichia coli, GI1789042, Length=290, Percent_Identity=28.2758620689655, Blast_Score=105, Evalue=9e-24, Organism=Escherichia coli, GI1788710, Length=291, Percent_Identity=31.9587628865979, Blast_Score=100, Evalue=2e-22, Organism=Escherichia coli, GI1790146, Length=184, Percent_Identity=31.5217391304348, Blast_Score=72, Evalue=1e-13, Organism=Saccharomyces cerevisiae, GI6323735, Length=326, Percent_Identity=29.4478527607362, Blast_Score=122, Evalue=9e-29, Organism=Saccharomyces cerevisiae, GI6322958, Length=518, Percent_Identity=24.1312741312741, Blast_Score=105, Evalue=1e-23, Organism=Saccharomyces cerevisiae, GI6319770, Length=430, Percent_Identity=23.7209302325581, Blast_Score=94, Evalue=6e-20, Organism=Saccharomyces cerevisiae, GI6325455, Length=203, Percent_Identity=30.5418719211823, Blast_Score=93, Evalue=1e-19, Organism=Saccharomyces cerevisiae, GI6321663, Length=149, Percent_Identity=35.5704697986577, Blast_Score=92, Evalue=2e-19,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR011701 - InterPro: IPR016196 - InterPro: IPR005829 - InterPro: IPR001958 - InterPro: IPR011991 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 52820; Mature: 52689
Theoretical pI: Translated: 9.55; Mature: 9.55
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 4.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSTAPVAPLVSDHRRRLIVFLFLMLAMFMATLDNQIVSTALPTIVGEFGALERFGWIGSA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH YLLATSAVMPVYGKLGDLFGRKYVMIAAVVIFTLGSLACGLAWSMDSLIAARVLQGLGGG HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GIMVSIFSVNADLFEPRERARYQSYSSLTIMASGSVGPILGGTMSDLFGWRSIFLINLPL CEEEEEEECCCHHCCCHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHEEEECCH GIIVIAGLALMLPYRRPARQPKIDYLGAVLLAATIASVVFWADSSELFGSLIAAPSLGII HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH AFAVIAAFLWVQVERRAPEPVVPLRLFKDSTFPLLMIVSLTSGGIGIGMVNYYALFLQTT HHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC TGLSPSHAGLFFIAVTGGIVMGSLSAGRLISITGVYKPFSVAGLTINVLVMLLFTQMHAG CCCCCCCCCEEEEEECCCHHEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC TPLWLIAVLMLAQGFAVGLGQQAPIIGVQNSAPKADIGAASGAVTLTRMGGAAIAISVYG CHHHHHHHHHHHCCHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEHHHHHH AIVSSSLKGVAIDIPGVGRIEELTPKMLAELPATSQAAVASLYSDAFTPLFFAAAATAAI HHHHCCCCCEEEECCCCCCHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLAAALMLKPVRLPAAVEAKPAEAAGE HHHHHHHHCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure STAPVAPLVSDHRRRLIVFLFLMLAMFMATLDNQIVSTALPTIVGEFGALERFGWIGSA CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH YLLATSAVMPVYGKLGDLFGRKYVMIAAVVIFTLGSLACGLAWSMDSLIAARVLQGLGGG HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC GIMVSIFSVNADLFEPRERARYQSYSSLTIMASGSVGPILGGTMSDLFGWRSIFLINLPL CEEEEEEECCCHHCCCHHHHHHCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHEEEECCH GIIVIAGLALMLPYRRPARQPKIDYLGAVLLAATIASVVFWADSSELFGSLIAAPSLGII HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHH AFAVIAAFLWVQVERRAPEPVVPLRLFKDSTFPLLMIVSLTSGGIGIGMVNYYALFLQTT HHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHC TGLSPSHAGLFFIAVTGGIVMGSLSAGRLISITGVYKPFSVAGLTINVLVMLLFTQMHAG CCCCCCCCCEEEEEECCCHHEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCC TPLWLIAVLMLAQGFAVGLGQQAPIIGVQNSAPKADIGAASGAVTLTRMGGAAIAISVYG CHHHHHHHHHHHCCHHCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEECCCCEEHHHHHH AIVSSSLKGVAIDIPGVGRIEELTPKMLAELPATSQAAVASLYSDAFTPLFFAAAATAAI HHHHCCCCCEEEECCCCCCHHHHCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH GLAAALMLKPVRLPAAVEAKPAEAAGE HHHHHHHHCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; drug [Cytoplasm] [C]
Specific reaction: Proton [Periplasm] + drug [Cytoplasm] = Proton [Cytoplasm] + drug [Periplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9634230; 12218036 [H]