Definition Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence.
Accession NC_003062
Length 2,841,580

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The map label for this gene is ycbL [C]

Identifier: 159184473

GI number: 159184473

Start: 808376

End: 809284

Strand: Reverse

Name: ycbL [C]

Synonym: Atu0807

Alternate gene names: 159184473

Gene position: 809284-808376 (Counterclockwise)

Preceding gene: 15888152

Following gene: 159184471

Centisome position: 28.48

GC content: 65.24

Gene sequence:

>909_bases
ATGGCGGACCCGGCATTCGATCTCGATTTCAAGCCGGCCTATGGCGAGGCGGTTCCTGTCGCCCCGCTCATCCAGCGCCT
CACCGTCAACAATCCTTCCGCCTTCACCTTCCATGGCACGAATTCCTATATCGTCGGTGACCGCTCCGTTGCCGTCATCG
ATCCGGGTCCGGAGGATGAGGCGCATTTTCAGGCTTTGATGGCGGCACTTGATGGGCGCGAGGTGACCCATATCTTCGTC
AGCCACACCCATCGCGATCATTCGCCGCTGGCCAGCCGGCTGGCACAGGCGACCGGGGCGCTGACGGTGGCGGAAGGTCC
GCATCGCGCTGCCCGGCCGCTGCATGTGGGCGAAACCAATCCCTTTGCCGAAAGTTCCGATACGGCTTTCGCGCCGGACA
TTACGCTTGGCGACGGGCAGAGCCTTTCCGGCGACGGCTGGAGGCTGACCGCGCTGCATACGCCGGGCCACACCGCCAAT
CACGCCGCCTTTGCGCTTGAGGGCAGCGGCATCGTCTTTTCCGCCGATCACGTCATGGCCTGGGCCACCACCATCGTCGC
ACCGCCTGATGGCGCGATGAGCGACTACATGGCCTCGCTGGAGCGGCTGCTCGCCCGCGACGACCGGCTGTTTCTGCCCG
GCCATGGCGGACCGGTCACCGACCCCGCCGCCTTCATGCGCGGGCTTCGCGCCCACCGCCGCATGCGGGAAAAAGCGGTT
CTGAAGCGTATCCGCGACGGCAACAGGCGGATCGCCGATATGGTGAAGGTGATCTATGCCAGCACCGACAAGCGCCTGCA
CGGCGCGGCCGCCCTTTCCGTGCTGGCGCATATCGAGGATCTGATCGAAAAGGGCCAAGTGCGCACAGACGGCGCGCCTT
CGCTGCTGGGCGAGTATTTTCCGGTCTGA

Upstream 100 bases:

>100_bases
GCTTTTTGGGTGCCGGGCCGCAGGCGGCATGATAGGGCTTGGCGATTGTGCGGCGGGTGCCGCCGGCATTTTCGGCATGG
CATTCATTCAGGAGGTCTCG

Downstream 100 bases:

>100_bases
CGAGGGTTTTGGCGCGAGACATCTTCGAGGATCGACCGCCTCATCTCTTTGCTGCGCCGTTTGACGGAATGAGCGGATAC
CGCCTGTTCTTCTCCCGGGC

Product: metallo-beta-lactamase superfamily protein

Products: NA

Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Hydrolase; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Zn-Dependent Hydrolase Glyoxylase; Beta-Lactamase-Like Protein; Beta-Lactamase Family Protein; Beta-Lactamase; Hydroxyacylglutathione Hydrolase; Metallo-Beta-Lactamase Family Hydrolase; Metallo-Beta-Lactamase Domain Protein; Hydrolase Protein; Zinc-Dependent Hydrolase; Metallo-Beta-Lactamase; Hydrolase/Glyoxylase; Zn-Dependent Hydrolase; Nudix Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Beta-Lactamase Class B; Beta-Lactamase-Like Hydrolase

Number of amino acids: Translated: 302; Mature: 301

Protein sequence:

>302_residues
MADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDEAHFQALMAALDGREVTHIFV
SHTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETNPFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTAN
HAAFALEGSGIVFSADHVMAWATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAV
LKRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYFPV

Sequences:

>Translated_302_residues
MADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDEAHFQALMAALDGREVTHIFV
SHTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETNPFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTAN
HAAFALEGSGIVFSADHVMAWATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAV
LKRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYFPV
>Mature_301_residues
ADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDEAHFQALMAALDGREVTHIFVS
HTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETNPFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTANH
AAFALEGSGIVFSADHVMAWATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAVL
KRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYFPV

Specific function: Unknown

COG id: COG0491

COG function: function code R; Zn-dependent hydrolases, including glyoxylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI7705793, Length=257, Percent_Identity=28.0155642023346, Blast_Score=107, Evalue=1e-23,
Organism=Drosophila melanogaster, GI20129357, Length=299, Percent_Identity=28.0936454849498, Blast_Score=110, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32412; Mature: 32281

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDE
CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEEECCCEEEEECCCCCCH
AHFQALMAALDGREVTHIFVSHTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETN
HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCEEECCCCCHHCCCEECCCCC
PFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTANHAAFALEGSGIVFSADHVMA
CCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEECCHHEE
WATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAV
EHEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LKRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYF
HHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
PV
CC
>Mature Secondary Structure 
ADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDE
CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEEECCCEEEEECCCCCCH
AHFQALMAALDGREVTHIFVSHTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETN
HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCEEECCCCCHHCCCEECCCCC
PFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTANHAAFALEGSGIVFSADHVMA
CCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEECCHHEE
WATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAV
EHEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LKRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYF
HHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC
PV
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA