Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is ycbL [C]
Identifier: 159184473
GI number: 159184473
Start: 808376
End: 809284
Strand: Reverse
Name: ycbL [C]
Synonym: Atu0807
Alternate gene names: 159184473
Gene position: 809284-808376 (Counterclockwise)
Preceding gene: 15888152
Following gene: 159184471
Centisome position: 28.48
GC content: 65.24
Gene sequence:
>909_bases ATGGCGGACCCGGCATTCGATCTCGATTTCAAGCCGGCCTATGGCGAGGCGGTTCCTGTCGCCCCGCTCATCCAGCGCCT CACCGTCAACAATCCTTCCGCCTTCACCTTCCATGGCACGAATTCCTATATCGTCGGTGACCGCTCCGTTGCCGTCATCG ATCCGGGTCCGGAGGATGAGGCGCATTTTCAGGCTTTGATGGCGGCACTTGATGGGCGCGAGGTGACCCATATCTTCGTC AGCCACACCCATCGCGATCATTCGCCGCTGGCCAGCCGGCTGGCACAGGCGACCGGGGCGCTGACGGTGGCGGAAGGTCC GCATCGCGCTGCCCGGCCGCTGCATGTGGGCGAAACCAATCCCTTTGCCGAAAGTTCCGATACGGCTTTCGCGCCGGACA TTACGCTTGGCGACGGGCAGAGCCTTTCCGGCGACGGCTGGAGGCTGACCGCGCTGCATACGCCGGGCCACACCGCCAAT CACGCCGCCTTTGCGCTTGAGGGCAGCGGCATCGTCTTTTCCGCCGATCACGTCATGGCCTGGGCCACCACCATCGTCGC ACCGCCTGATGGCGCGATGAGCGACTACATGGCCTCGCTGGAGCGGCTGCTCGCCCGCGACGACCGGCTGTTTCTGCCCG GCCATGGCGGACCGGTCACCGACCCCGCCGCCTTCATGCGCGGGCTTCGCGCCCACCGCCGCATGCGGGAAAAAGCGGTT CTGAAGCGTATCCGCGACGGCAACAGGCGGATCGCCGATATGGTGAAGGTGATCTATGCCAGCACCGACAAGCGCCTGCA CGGCGCGGCCGCCCTTTCCGTGCTGGCGCATATCGAGGATCTGATCGAAAAGGGCCAAGTGCGCACAGACGGCGCGCCTT CGCTGCTGGGCGAGTATTTTCCGGTCTGA
Upstream 100 bases:
>100_bases GCTTTTTGGGTGCCGGGCCGCAGGCGGCATGATAGGGCTTGGCGATTGTGCGGCGGGTGCCGCCGGCATTTTCGGCATGG CATTCATTCAGGAGGTCTCG
Downstream 100 bases:
>100_bases CGAGGGTTTTGGCGCGAGACATCTTCGAGGATCGACCGCCTCATCTCTTTGCTGCGCCGTTTGACGGAATGAGCGGATAC CGCCTGTTCTTCTCCCGGGC
Product: metallo-beta-lactamase superfamily protein
Products: NA
Alternate protein names: Beta-Lactamase Domain Protein; Metallo-Beta-Lactamase Family Protein; Hydrolase; Metallo-Beta-Lactamase Superfamily Protein; Beta-Lactamase-Like; Zn-Dependent Hydrolase Glyoxylase; Beta-Lactamase-Like Protein; Beta-Lactamase Family Protein; Beta-Lactamase; Hydroxyacylglutathione Hydrolase; Metallo-Beta-Lactamase Family Hydrolase; Metallo-Beta-Lactamase Domain Protein; Hydrolase Protein; Zinc-Dependent Hydrolase; Metallo-Beta-Lactamase; Hydrolase/Glyoxylase; Zn-Dependent Hydrolase; Nudix Hydrolase; NUDIX HydrolaseBeta-Lactamase-Like; Beta-Lactamase Class B; Beta-Lactamase-Like Hydrolase
Number of amino acids: Translated: 302; Mature: 301
Protein sequence:
>302_residues MADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDEAHFQALMAALDGREVTHIFV SHTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETNPFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTAN HAAFALEGSGIVFSADHVMAWATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAV LKRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYFPV
Sequences:
>Translated_302_residues MADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDEAHFQALMAALDGREVTHIFV SHTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETNPFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTAN HAAFALEGSGIVFSADHVMAWATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAV LKRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYFPV >Mature_301_residues ADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDEAHFQALMAALDGREVTHIFVS HTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETNPFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTANH AAFALEGSGIVFSADHVMAWATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAVL KRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYFPV
Specific function: Unknown
COG id: COG0491
COG function: function code R; Zn-dependent hydrolases, including glyoxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI7705793, Length=257, Percent_Identity=28.0155642023346, Blast_Score=107, Evalue=1e-23, Organism=Drosophila melanogaster, GI20129357, Length=299, Percent_Identity=28.0936454849498, Blast_Score=110, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32412; Mature: 32281
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDE CCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEEECCCEEEEECCCCCCH AHFQALMAALDGREVTHIFVSHTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETN HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCEEECCCCCHHCCCEECCCCC PFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTANHAAFALEGSGIVFSADHVMA CCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEECCHHEE WATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAV EHEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH LKRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYF HHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC PV CC >Mature Secondary Structure ADPAFDLDFKPAYGEAVPVAPLIQRLTVNNPSAFTFHGTNSYIVGDRSVAVIDPGPEDE CCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCEEEECCCEEEEECCCCCCH AHFQALMAALDGREVTHIFVSHTHRDHSPLASRLAQATGALTVAEGPHRAARPLHVGETN HHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHCCEEECCCCCHHCCCEECCCCC PFAESSDTAFAPDITLGDGQSLSGDGWRLTALHTPGHTANHAAFALEGSGIVFSADHVMA CCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCCCCCEEEEEECCCEEEECCHHEE WATTIVAPPDGAMSDYMASLERLLARDDRLFLPGHGGPVTDPAAFMRGLRAHRRMREKAV EHEEEECCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH LKRIRDGNRRIADMVKVIYASTDKRLHGAAALSVLAHIEDLIEKGQVRTDGAPSLLGEYF HHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHC PV CC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA