Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184468
Identifier: 159184468
GI number: 159184468
Start: 792337
End: 793092
Strand: Reverse
Name: 159184468
Synonym: Atu0796
Alternate gene names: NA
Gene position: 793092-792337 (Counterclockwise)
Preceding gene: 15888140
Following gene: 15888137
Centisome position: 27.91
GC content: 53.17
Gene sequence:
>756_bases ATGTCTGCGATATCGCGACATATTATTGATCGAGGTGATGGCGCGGCCGTTGAACTTTTCCAGGCTCAAACCGCATTTCC ACCGAAGGGAGCGATACTGTTTGTTCATGGCAATCAGGGCGGGCTTCTTCTGGGGGCGAAAGAGGCTGTCGATAACGGAA TGCTGCTCCGTTTCTCATCCCGCCTGAACGTCACGGCGGCGGCGGTTTCGCAGCCCGGATTTGGCGCATCCGAAGGCCCC ACAGACTTTTGCGGTCCAACCACCCAGCAGGCGATTATAGCTGCCTTGGGTTTTCTTCAGAAGCAATCTTTAATCGATCC CGAACGAATCATTCTTTACGGCAATAGTCGCGGGGCAGTCGCGTCGGCGATGGTTGCCACCCAGATGCCCGATCTGCGCG CTGTCATTCTATCGAGTGGCGTTTACGATCTCAAACGAGCTTATCAAAGCAGTCCGCGGGGTTTGCAGTTGGCAATTGAG AAAGAGGCTGGACTTACGAATACAGCTTTCTTGGATCGTTCTGCTCTGTTTCATTCACACAAAATTCGCGCAGAAACACT TCTCTTGCATGGTAAACATGACGATCGTGCACCGGTGGATCAAGCCGAGAGATTCGCAAATGCGATTTCGGAAGCAGGAC TATCCGTCGACCTTCAGACTTTTGAATGTGGGCATCGTATCGCGGGCGAGCTTACCGCTCCAGTCCTGCGCAATTTCCTG ACGAGGATACTTGCCCCTGCTGCCACTTTTCACTGA
Upstream 100 bases:
>100_bases CGGCGCGGAAAAGCTGAAGCAGGATTTGCGGGCCTATGGGGTGGAGGTGTAAAGACATTCGTAGTCTCTACACCCATCGG CTGTAACTTGAGGGCTGGCC
Downstream 100 bases:
>100_bases TCTTATAACCGTTAAGCCGAAGCGAACAAGGCCTCCTGCGAGCGATCGCCAATGCCGCTCTGCATCTCCTATGAAGACAG CGTGCAGAATTTGGCAAGGT
Product: putative peptidase
Products: NA
Alternate protein names: Attachment Host Cell Protein
Number of amino acids: Translated: 251; Mature: 250
Protein sequence:
>251_residues MSAISRHIIDRGDGAAVELFQAQTAFPPKGAILFVHGNQGGLLLGAKEAVDNGMLLRFSSRLNVTAAAVSQPGFGASEGP TDFCGPTTQQAIIAALGFLQKQSLIDPERIILYGNSRGAVASAMVATQMPDLRAVILSSGVYDLKRAYQSSPRGLQLAIE KEAGLTNTAFLDRSALFHSHKIRAETLLLHGKHDDRAPVDQAERFANAISEAGLSVDLQTFECGHRIAGELTAPVLRNFL TRILAPAATFH
Sequences:
>Translated_251_residues MSAISRHIIDRGDGAAVELFQAQTAFPPKGAILFVHGNQGGLLLGAKEAVDNGMLLRFSSRLNVTAAAVSQPGFGASEGP TDFCGPTTQQAIIAALGFLQKQSLIDPERIILYGNSRGAVASAMVATQMPDLRAVILSSGVYDLKRAYQSSPRGLQLAIE KEAGLTNTAFLDRSALFHSHKIRAETLLLHGKHDDRAPVDQAERFANAISEAGLSVDLQTFECGHRIAGELTAPVLRNFL TRILAPAATFH >Mature_250_residues SAISRHIIDRGDGAAVELFQAQTAFPPKGAILFVHGNQGGLLLGAKEAVDNGMLLRFSSRLNVTAAAVSQPGFGASEGPT DFCGPTTQQAIIAALGFLQKQSLIDPERIILYGNSRGAVASAMVATQMPDLRAVILSSGVYDLKRAYQSSPRGLQLAIEK EAGLTNTAFLDRSALFHSHKIRAETLLLHGKHDDRAPVDQAERFANAISEAGLSVDLQTFECGHRIAGELTAPVLRNFLT RILAPAATFH
Specific function: Unknown
COG id: COG1506
COG function: function code E; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26757; Mature: 26626
Theoretical pI: Translated: 7.74; Mature: 7.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSAISRHIIDRGDGAAVELFQAQTAFPPKGAILFVHGNQGGLLLGAKEAVDNGMLLRFSS CCCHHHHHHCCCCCCEEEEEEHHCCCCCCCEEEEEECCCCCEEEECHHHHCCCEEEEECC RLNVTAAAVSQPGFGASEGPTDFCGPTTQQAIIAALGFLQKQSLIDPERIILYGNSRGAV CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH ASAMVATQMPDLRAVILSSGVYDLKRAYQSSPRGLQLAIEKEAGLTNTAFLDRSALFHSH HHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH KIRAETLLLHGKHDDRAPVDQAERFANAISEAGLSVDLQTFECGHRIAGELTAPVLRNFL CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHHHHHHHH TRILAPAATFH HHHHHHHHCCC >Mature Secondary Structure SAISRHIIDRGDGAAVELFQAQTAFPPKGAILFVHGNQGGLLLGAKEAVDNGMLLRFSS CCHHHHHHCCCCCCEEEEEEHHCCCCCCCEEEEEECCCCCEEEECHHHHCCCEEEEECC RLNVTAAAVSQPGFGASEGPTDFCGPTTQQAIIAALGFLQKQSLIDPERIILYGNSRGAV CCCEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH ASAMVATQMPDLRAVILSSGVYDLKRAYQSSPRGLQLAIEKEAGLTNTAFLDRSALFHSH HHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH KIRAETLLLHGKHDDRAPVDQAERFANAISEAGLSVDLQTFECGHRIAGELTAPVLRNFL CCEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHHCCHHHHHHHHHHHHHHHH TRILAPAATFH HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA