Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is yihX [C]
Identifier: 15888140
GI number: 15888140
Start: 793141
End: 793752
Strand: Reverse
Name: yihX [C]
Synonym: Atu0797
Alternate gene names: 15888140
Gene position: 793752-793141 (Counterclockwise)
Preceding gene: 15888141
Following gene: 159184468
Centisome position: 27.93
GC content: 58.5
Gene sequence:
>612_bases ATGACCAAGATTGACCATATCGTATTCGACATCGGCAAGGTGCTGATCCATTACGATCCGCATATTCCCTATAGCCGCCT CATTCCCGATGCCGATGAGCGCCAATGGTTCTTCGAGAATGTCTGCACCCATGACTGGAACCTCGAACAGGATCGCGGCC GCCGCTGGGAAGATGCCGAGGCGCTGCTGCTTGAGCGGTTTCCCGAACGGGAAGAGCACATCCGCGCCTTCCGCAAGTTC TGGCACGAGATGGTCTCGCACTCCTATGATGACAGCGTCGCGATCATGGTTGCCCTGATCGACAGCGGCCATGATGTGAC GATGCTGACCAACTTCGCCTCCGACACTTTTCGCGAAGCGCAGAAGATGTTCCCCTTCCTCACCCTGCCGCGCGGCGTAA CGGTCTCCGGCGACGTGAAGCTTTTGAAGCCGGATGTGGCGATCTACCATCTGCACGCCAAAGAATTCGGCCTCAATCCG GCCACCAGCCTCTTCATCGACGATACGCTCGCCAATGTCGAAGGCGCCAAGGCCGCCGGCTGGCAGGCCGTGCATTTTAC CGGCGCGGAAAAGCTGAAGCAGGATTTGCGGGCCTATGGGGTGGAGGTGTAA
Upstream 100 bases:
>100_bases AGCCGGTTACAAATCTTGACGCGCAGGCGCTGCCAACGGTGATGAAAAAAGTCATTGCAGAGGCTATTCCATCCGCATTC GATAAAAGCAGGAAGTTTCG
Downstream 100 bases:
>100_bases AGACATTCGTAGTCTCTACACCCATCGGCTGTAACTTGAGGGCTGGCCATGTCTGCGATATCGCGACATATTATTGATCG AGGTGATGGCGCGGCCGTTG
Product: hydrolase
Products: NA
Alternate protein names: HAD-Superfamily Hydrolase; Hydrolase; HAD Superfamily Hydrolase; Haloacid Dehalogenase-Like Hydrolase; Alpha Beta Hydrolase; HAD Hydrolase Family IA; 2-Haloacid Dehalogenase; HAD Family Phosphatase; Hydrolase Haloacid Dehalogenase-Like Family Protein; Haloacid Dehalogenase Superfamily Protein; Hydrolase Protein; Haloacid Dehalogenase-Like Family Hydrolase; HAD-Superfamily Hydrolase Subfamily IA; Hydrolase Haloacid Dehalogenase-Like Family; Hydrolase Protein Haloacid Dehalogenase-Like Family; Haloacid Dehalogenase-Like Hydrolase Protein; HAD Hydrolase Superfamily Protein
Number of amino acids: Translated: 203; Mature: 202
Protein sequence:
>203_residues MTKIDHIVFDIGKVLIHYDPHIPYSRLIPDADERQWFFENVCTHDWNLEQDRGRRWEDAEALLLERFPEREEHIRAFRKF WHEMVSHSYDDSVAIMVALIDSGHDVTMLTNFASDTFREAQKMFPFLTLPRGVTVSGDVKLLKPDVAIYHLHAKEFGLNP ATSLFIDDTLANVEGAKAAGWQAVHFTGAEKLKQDLRAYGVEV
Sequences:
>Translated_203_residues MTKIDHIVFDIGKVLIHYDPHIPYSRLIPDADERQWFFENVCTHDWNLEQDRGRRWEDAEALLLERFPEREEHIRAFRKF WHEMVSHSYDDSVAIMVALIDSGHDVTMLTNFASDTFREAQKMFPFLTLPRGVTVSGDVKLLKPDVAIYHLHAKEFGLNP ATSLFIDDTLANVEGAKAAGWQAVHFTGAEKLKQDLRAYGVEV >Mature_202_residues TKIDHIVFDIGKVLIHYDPHIPYSRLIPDADERQWFFENVCTHDWNLEQDRGRRWEDAEALLLERFPEREEHIRAFRKFW HEMVSHSYDDSVAIMVALIDSGHDVTMLTNFASDTFREAQKMFPFLTLPRGVTVSGDVKLLKPDVAIYHLHAKEFGLNPA TSLFIDDTLANVEGAKAAGWQAVHFTGAEKLKQDLRAYGVEV
Specific function: Unknown
COG id: COG1011
COG function: function code R; Predicted hydrolase (HAD superfamily)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23425; Mature: 23294
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKIDHIVFDIGKVLIHYDPHIPYSRLIPDADERQWFFENVCTHDWNLEQDRGRRWEDAE CCCHHHHHHHHHHHEEEECCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCHHHCCCCCHHH ALLLERFPEREEHIRAFRKFWHEMVSHSYDDSVAIMVALIDSGHDVTMLTNFASDTFREA HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHH QKMFPFLTLPRGVTVSGDVKLLKPDVAIYHLHAKEFGLNPATSLFIDDTLANVEGAKAAG HHHCCEEECCCCEEECCCEEEECCCEEEEEEEHHHHCCCCHHHEEEHHHHHCCCCCCCCC WQAVHFTGAEKLKQDLRAYGVEV EEEEEECCHHHHHHHHHHHCCCC >Mature Secondary Structure TKIDHIVFDIGKVLIHYDPHIPYSRLIPDADERQWFFENVCTHDWNLEQDRGRRWEDAE CCHHHHHHHHHHHEEEECCCCCHHHCCCCCCHHHHHHHHHCCCCCCCCHHHCCCCCHHH ALLLERFPEREEHIRAFRKFWHEMVSHSYDDSVAIMVALIDSGHDVTMLTNFASDTFREA HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCEEEEEHHHHHHHHHH QKMFPFLTLPRGVTVSGDVKLLKPDVAIYHLHAKEFGLNPATSLFIDDTLANVEGAKAAG HHHCCEEECCCCEEECCCEEEECCCEEEEEEEHHHHCCCCHHHEEEHHHHHCCCCCCCCC WQAVHFTGAEKLKQDLRAYGVEV EEEEEECCHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA