Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is tldD [H]
Identifier: 159184456
GI number: 159184456
Start: 760182
End: 761597
Strand: Reverse
Name: tldD [H]
Synonym: Atu0765
Alternate gene names: 159184456
Gene position: 761597-760182 (Counterclockwise)
Preceding gene: 15888109
Following gene: 159184455
Centisome position: 26.8
GC content: 62.64
Gene sequence:
>1416_bases ATGACCGACGACCTTGTAAAACTCTTCGATTGCGATGAAACGCAATTGCGCAAGCTCGTCGGAGAGGCGCTTGCCGGTGC TGACGATGGCGAATTGTTCATCGAGCATGCCCAGGCCGAATCGTTGACCTTCGACAATGGCCGCCTGAAGGGTGGGTCCT TCAACACCGACCAGGGTTTTGGCCTGCGCGCCGTTGCCGGCGAGACGGTGGGTTACGCCCATGCAGGCGAGCTTTCCGAA GGGGCGCTGAAGCGCGCTTCGGACGCGGTCGGCGCTGTCACCCGGGGTTATTCCGGCTCCTATGCCGCCGCACCCCAGCG CACCAACAAGAAGCTCTACGGCGACGAAAACCCTATCGGCAGCCCGAGCTTTGAAGAGAAAGTGAAGCTGCTCACCGACA TCGACGCCTATCTGCGCGACAGGGACGACAAGGTCCGGCAGGTGACGGCGACGATTTCCGCCAGCTGGCAGGTGGTGGAT ATTCTGCGTGCCGATGGCCATCGCGTCAGCGACATCCGCCCCATGACCCGCATCAACATCTCCGTGGTGGCGGGCGAAGG CGACCGGCAGGAGAGCGGCTCTTATGGCATTGGCGGGCGCGTCGGTTTCGGCGATTTCATCACCACGGAAAACTGGCAGC GCGGCGCAGATGAAGCGCTGCGGCAGGCGCTCGTCAACCTTACCGCCATCGATGCACCGGCCGGCACCATGGATGTCGTT CTCGGCTCAGGCTGGCCCGGCGTCATGCTGCACGAGGCGGTTGGCCATGGCCTTGAAGGCGATTTCAACCGCAAGAAGAC CTCGGCCTTTGCCGGCCTGATGGGAGAAATGGTCGCCGCCCCCGGCGTGACGGTCGTGGATGACGGCACGATCGACAGCC GCCGCGGTTCGCTGACCATCGACGACGAAGGCACGCCCTCGGCTTATAATGTGCTGATCGAAAATGGCAGGCTCGTCGGA TATATGCAGGACCGCCAGAACGCCCGGCTGATGGGCGCGAAGGCGACCGGCAACGGCCGCCGGCAGGGTTATGCCTATGT GCCGATGCCGCGCATGACAAATACCTACATGCTCTCCGGCGACAAGACGCCGGAAGAAATCATCTCCTCCGTGAAGAAGG GCATCTACGCCGTTTCCTTCGGCGGGGGCCAGGTGGATATCACCTCAGGCAAATTCGTGTTCGGCTGCACCGAGGCCTAC CTTATCGAGAATGGCAAGATCGGCGCGCCGGTGAAGGGCGCGATGCTGATCGGCAACGGGCCGGATGCGATGAAGCGCGT CTCAATGATCGGCAATGATTCCAAGCTCGATACCGGCATCGGCAATTGCGGCAAGGCCGGGCAATGGGTGCCGGTTGGTG TCGGCCAGCCGCATCTGCGCATGGACCAGATCACCGTGGGTGGCACGAAGGCGTAG
Upstream 100 bases:
>100_bases CTACGACGCGCTTCCCTGAGGCATCGTCGTAACGGGCAGCCTTGCGTCTGCCCGTTCCAGTGCCTAAATCGGTCATGAAC GATCATGACTGGAGCCTGAG
Downstream 100 bases:
>100_bases GTCAACGGCGCAGGCGCGGCAACGGAAGCAGCGACAATTCTCACCCGCAGCGTCGCAGCCACCTACCAGCCCATAGCCTC ACACATGGCTGCCATGATGA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 471; Mature: 470
Protein sequence:
>471_residues MTDDLVKLFDCDETQLRKLVGEALAGADDGELFIEHAQAESLTFDNGRLKGGSFNTDQGFGLRAVAGETVGYAHAGELSE GALKRASDAVGAVTRGYSGSYAAAPQRTNKKLYGDENPIGSPSFEEKVKLLTDIDAYLRDRDDKVRQVTATISASWQVVD ILRADGHRVSDIRPMTRINISVVAGEGDRQESGSYGIGGRVGFGDFITTENWQRGADEALRQALVNLTAIDAPAGTMDVV LGSGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGEMVAAPGVTVVDDGTIDSRRGSLTIDDEGTPSAYNVLIENGRLVG YMQDRQNARLMGAKATGNGRRQGYAYVPMPRMTNTYMLSGDKTPEEIISSVKKGIYAVSFGGGQVDITSGKFVFGCTEAY LIENGKIGAPVKGAMLIGNGPDAMKRVSMIGNDSKLDTGIGNCGKAGQWVPVGVGQPHLRMDQITVGGTKA
Sequences:
>Translated_471_residues MTDDLVKLFDCDETQLRKLVGEALAGADDGELFIEHAQAESLTFDNGRLKGGSFNTDQGFGLRAVAGETVGYAHAGELSE GALKRASDAVGAVTRGYSGSYAAAPQRTNKKLYGDENPIGSPSFEEKVKLLTDIDAYLRDRDDKVRQVTATISASWQVVD ILRADGHRVSDIRPMTRINISVVAGEGDRQESGSYGIGGRVGFGDFITTENWQRGADEALRQALVNLTAIDAPAGTMDVV LGSGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGEMVAAPGVTVVDDGTIDSRRGSLTIDDEGTPSAYNVLIENGRLVG YMQDRQNARLMGAKATGNGRRQGYAYVPMPRMTNTYMLSGDKTPEEIISSVKKGIYAVSFGGGQVDITSGKFVFGCTEAY LIENGKIGAPVKGAMLIGNGPDAMKRVSMIGNDSKLDTGIGNCGKAGQWVPVGVGQPHLRMDQITVGGTKA >Mature_470_residues TDDLVKLFDCDETQLRKLVGEALAGADDGELFIEHAQAESLTFDNGRLKGGSFNTDQGFGLRAVAGETVGYAHAGELSEG ALKRASDAVGAVTRGYSGSYAAAPQRTNKKLYGDENPIGSPSFEEKVKLLTDIDAYLRDRDDKVRQVTATISASWQVVDI LRADGHRVSDIRPMTRINISVVAGEGDRQESGSYGIGGRVGFGDFITTENWQRGADEALRQALVNLTAIDAPAGTMDVVL GSGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGEMVAAPGVTVVDDGTIDSRRGSLTIDDEGTPSAYNVLIENGRLVGY MQDRQNARLMGAKATGNGRRQGYAYVPMPRMTNTYMLSGDKTPEEIISSVKKGIYAVSFGGGQVDITSGKFVFGCTEAYL IENGKIGAPVKGAMLIGNGPDAMKRVSMIGNDSKLDTGIGNCGKAGQWVPVGVGQPHLRMDQITVGGTKA
Specific function: Suppresses The Inhibitory Activity Of The Carbon Storage Regulator (Csra). [C]
COG id: COG0312
COG function: function code R; Predicted Zn-dependent proteases and their inactivated homologs
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase U62 family [H]
Homologues:
Organism=Escherichia coli, GI1789640, Length=447, Percent_Identity=53.9149888143177, Blast_Score=464, Evalue=1e-132,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002510 [H]
Pfam domain/function: PF01523 PmbA_TldD [H]
EC number: NA
Molecular weight: Translated: 49931; Mature: 49800
Theoretical pI: Translated: 5.11; Mature: 5.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTDDLVKLFDCDETQLRKLVGEALAGADDGELFIEHAQAESLTFDNGRLKGGSFNTDQGF CCCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCEECCCCCCCCCCC GLRAVAGETVGYAHAGELSEGALKRASDAVGAVTRGYSGSYAAAPQRTNKKLYGDENPIG CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC SPSFEEKVKLLTDIDAYLRDRDDKVRQVTATISASWQVVDILRADGHRVSDIRPMTRINI CCCHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEE SVVAGEGDRQESGSYGIGGRVGFGDFITTENWQRGADEALRQALVNLTAIDAPAGTMDVV EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEE LGSGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGEMVAAPGVTVVDDGTIDSRRGSLTI EECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEE DDEGTPSAYNVLIENGRLVGYMQDRQNARLMGAKATGNGRRQGYAYVPMPRMTNTYMLSG CCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEEEC DKTPEEIISSVKKGIYAVSFGGGQVDITSGKFVFGCTEAYLIENGKIGAPVKGAMLIGNG CCCHHHHHHHHHCCEEEEEECCCEEEEECCCEEEECCEEEEEECCCCCCCCCCEEEECCC PDAMKRVSMIGNDSKLDTGIGNCGKAGQWVPVGVGQPHLRMDQITVGGTKA HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCC >Mature Secondary Structure TDDLVKLFDCDETQLRKLVGEALAGADDGELFIEHAQAESLTFDNGRLKGGSFNTDQGF CCCCEEEECCCHHHHHHHHHHHHCCCCCCCEEEEECCCCEEEECCCEECCCCCCCCCCC GLRAVAGETVGYAHAGELSEGALKRASDAVGAVTRGYSGSYAAAPQRTNKKLYGDENPIG CEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC SPSFEEKVKLLTDIDAYLRDRDDKVRQVTATISASWQVVDILRADGHRVSDIRPMTRINI CCCHHHHHHHHHHHHHHHHCCCHHHEEEEEEECCCEEEEEEECCCCCCCCCCCCEEEEEE SVVAGEGDRQESGSYGIGGRVGFGDFITTENWQRGADEALRQALVNLTAIDAPAGTMDVV EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHEEECCCCCCEEEE LGSGWPGVMLHEAVGHGLEGDFNRKKTSAFAGLMGEMVAAPGVTVVDDGTIDSRRGSLTI EECCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEEEE DDEGTPSAYNVLIENGRLVGYMQDRQNARLMGAKATGNGRRQGYAYVPMPRMTNTYMLSG CCCCCCCEEEEEEECCEEEEEEECCCCCEEEEEECCCCCCCCCEEEECCCCCCCEEEEEC DKTPEEIISSVKKGIYAVSFGGGQVDITSGKFVFGCTEAYLIENGKIGAPVKGAMLIGNG CCCHHHHHHHHHCCEEEEEECCCEEEEECCCEEEECCEEEEEECCCCCCCCCCEEEECCC PDAMKRVSMIGNDSKLDTGIGNCGKAGQWVPVGVGQPHLRMDQITVGGTKA HHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]