Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is sohB [H]
Identifier: 159184399
GI number: 159184399
Start: 625105
End: 625887
Strand: Direct
Name: sohB [H]
Synonym: Atu0637
Alternate gene names: 159184399
Gene position: 625105-625887 (Clockwise)
Preceding gene: 15887977
Following gene: 15887979
Centisome position: 22.0
GC content: 60.41
Gene sequence:
>783_bases ATGGCCGGCGGCAACCAGTTCCGCCCCGCCCTCAATCTCGCCTCCTACGCGCCGCTGCTTGAAAAGGCCTTCGCCGTCAA GGACGCCCCGGCGGTTGCCATCTCGCTGAATTCGCCAGGCGGCTCGCCGGTGCAGGCGCGGATGATCTATAATCGTATCC GCCAGCTTGCCGAGGAAAAGGACAAGAAGGTTCTGATCTTCGTGGAAGACGTGGCTGCCTCCGGCGGCTACATGATTGCG CTTGCTGGCGATGAGATCATCGCCGACCCCACCTCCATCGTCGGTTCGATCGGCGTCGTATCCGGCGGCTTCGGTTTTCC GGAAATGCTGCGGAAGATCGGCGTGGAGCGCCGCGTCTATACCGCTGGCGAAAACAAGGTCATCCTCGATCCGTTCCAGC CGGAAAAGGAAGGCGATATCGATTACCTGAAGTCCTTGCAGGTCGAAATCCACAATGTCTTCATTGATATGGTCAAGATG CGCCGGGGCTCGAAGCTGAAGGGCGACGACGCACTCTTTTCCGGCCTGTTCTGGACCGGCATGCGTGGCCTCGACCTCGG CCTGATTGACGGGCTGGGCGACATGCGCGAGGTTTTGCGCCGCCGTTACGGGACAAAGGTCAAGCTTCAACTCATCAGCG GCGGGCGTTCGCTGTTCGGCAAAAAAGTGCCTGGCGTGAATATGGCGCTCGGCCTCAATGCTGAAAGGCTCGCGGCAGGC GCCGTCTCGGGTCTTGCGGAGGTTGCCGAAGAAAAGGCATTGTGGTCGCGTTTCGGTCTATGA
Upstream 100 bases:
>100_bases ACGCGAGGATTGATTGGTGGGTTTTCTGAAGCATCTGGTGCCGAAACGCTTTCGCAAAAAAGAGCTCGTCATACCCGTCG TGCGCATGCAGGGCGCGATC
Downstream 100 bases:
>100_bases TGTCGCAGGAATAAGGCCTTATGGCGCAGCTCATTACAATTCTTCTTCTGCTGGTGGGGTCCATCATCCTCTATCGCCGC TTTGTTCGCGATGCGGAAAA
Product: proteinase sohB
Products: NA
Alternate protein names: Sodium/proton antiporter nhaA [H]
Number of amino acids: Translated: 260; Mature: 259
Protein sequence:
>260_residues MAGGNQFRPALNLASYAPLLEKAFAVKDAPAVAISLNSPGGSPVQARMIYNRIRQLAEEKDKKVLIFVEDVAASGGYMIA LAGDEIIADPTSIVGSIGVVSGGFGFPEMLRKIGVERRVYTAGENKVILDPFQPEKEGDIDYLKSLQVEIHNVFIDMVKM RRGSKLKGDDALFSGLFWTGMRGLDLGLIDGLGDMREVLRRRYGTKVKLQLISGGRSLFGKKVPGVNMALGLNAERLAAG AVSGLAEVAEEKALWSRFGL
Sequences:
>Translated_260_residues MAGGNQFRPALNLASYAPLLEKAFAVKDAPAVAISLNSPGGSPVQARMIYNRIRQLAEEKDKKVLIFVEDVAASGGYMIA LAGDEIIADPTSIVGSIGVVSGGFGFPEMLRKIGVERRVYTAGENKVILDPFQPEKEGDIDYLKSLQVEIHNVFIDMVKM RRGSKLKGDDALFSGLFWTGMRGLDLGLIDGLGDMREVLRRRYGTKVKLQLISGGRSLFGKKVPGVNMALGLNAERLAAG AVSGLAEVAEEKALWSRFGL >Mature_259_residues AGGNQFRPALNLASYAPLLEKAFAVKDAPAVAISLNSPGGSPVQARMIYNRIRQLAEEKDKKVLIFVEDVAASGGYMIAL AGDEIIADPTSIVGSIGVVSGGFGFPEMLRKIGVERRVYTAGENKVILDPFQPEKEGDIDYLKSLQVEIHNVFIDMVKMR RGSKLKGDDALFSGLFWTGMRGLDLGLIDGLGDMREVLRRRYGTKVKLQLISGGRSLFGKKVPGVNMALGLNAERLAAGA VSGLAEVAEEKALWSRFGL
Specific function: Na(+)/H(+) antiporter that extrudes sodium in exchange for external protons [H]
COG id: COG0616
COG function: function code OU; Periplasmic serine proteases (ClpP class)
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the peptidase S49 family [H]
Homologues:
Organism=Escherichia coli, GI1787527, Length=176, Percent_Identity=32.3863636363636, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI1788064, Length=176, Percent_Identity=31.25, Blast_Score=62, Evalue=3e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023171 - InterPro: IPR004670 - InterPro: IPR002142 [H]
Pfam domain/function: PF06965 Na_H_antiport_1; PF01343 Peptidase_S49 [H]
EC number: 3.4.21.- [C]
Molecular weight: Translated: 28029; Mature: 27898
Theoretical pI: Translated: 9.71; Mature: 9.71
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAGGNQFRPALNLASYAPLLEKAFAVKDAPAVAISLNSPGGSPVQARMIYNRIRQLAEEK CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC DKKVLIFVEDVAASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPEMLRKIGVERRVY CCEEEEEEEEECCCCCEEEEEECCCEECCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEE TAGENKVILDPFQPEKEGDIDYLKSLQVEIHNVFIDMVKMRRGSKLKGDDALFSGLFWTG ECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC MRGLDLGLIDGLGDMREVLRRRYGTKVKLQLISGGRSLFGKKVPGVNMALGLNAERLAAG CCCCCHHHHCCCHHHHHHHHHHCCCEEEEEEECCCHHHHCCCCCCCEEEECCCHHHHHHH AVSGLAEVAEEKALWSRFGL HHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure AGGNQFRPALNLASYAPLLEKAFAVKDAPAVAISLNSPGGSPVQARMIYNRIRQLAEEK CCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHC DKKVLIFVEDVAASGGYMIALAGDEIIADPTSIVGSIGVVSGGFGFPEMLRKIGVERRVY CCEEEEEEEEECCCCCEEEEEECCCEECCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEE TAGENKVILDPFQPEKEGDIDYLKSLQVEIHNVFIDMVKMRRGSKLKGDDALFSGLFWTG ECCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHC MRGLDLGLIDGLGDMREVLRRRYGTKVKLQLISGGRSLFGKKVPGVNMALGLNAERLAAG CCCCCHHHHCCCHHHHHHHHHHCCCEEEEEEECCCHHHHCCCCCCCEEEECCCHHHHHHH AVSGLAEVAEEKALWSRFGL HHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Hydrolase; Acting on peptide bonds (Peptidases) [C]
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA