Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 159184360
Identifier: 159184360
GI number: 159184360
Start: 529302
End: 529742
Strand: Reverse
Name: 159184360
Synonym: Atu0538
Alternate gene names: NA
Gene position: 529742-529302 (Counterclockwise)
Preceding gene: 15887887
Following gene: 15887885
Centisome position: 18.64
GC content: 57.82
Gene sequence:
>441_bases ATGAGCGGCCTGAAATTGCTGGCGCTGGATACCGAAGATCTCTCGATCATCTCGACACACATGCAGGACAGCGTCTTCAA GCTCAAGGATGTTGCCTTCGAACCGAGGCAGGGGCAGTTTACCCTTTCCGCCAACCGTTTCGTTTGGGAAAGCGCCAGCA AAAAGAATTTGCCCCCCGAGCGCTGCCGCAGCGTGATTTTCCTGAAGCGTGTGTCTGCCGTCCGTTCGCAGTCCATCAAC TTGGCCGACAGGGAGCAGGTGCTTTCGCTTCTGGCAATACGCTTTACCCCTGATGGTGAAGGGCCGGATGGTGTCGTTGA ACTGGCGCTTTCGGGCGGTGGTACCATTGCACTCGATGTCGAATGCATCGAGGCGCAGCTGACCGACGTGAGCGGCGCCT GGGAAACCGCCGCCAAACCGCATCATCCCGACAGCGAATAA
Upstream 100 bases:
>100_bases GCTCTTCGATTTTCCACCCGTTGCACAGCGGGCCGCGACTGCTTATTTCCAGTACAAGAAATAGACATTGCGGCCCGTGT CCGCGGAAAAGGAAGAAATG
Downstream 100 bases:
>100_bases ACGTTGCGAGCCCTCGCAACGGTTGCCTTTCCTTGCCGTTTCGATTTATGCCACTTACCAGAGCCGTGATTATTGCGCGG CAAGTTCGTATACCTCGCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 146; Mature: 145
Protein sequence:
>146_residues MSGLKLLALDTEDLSIISTHMQDSVFKLKDVAFEPRQGQFTLSANRFVWESASKKNLPPERCRSVIFLKRVSAVRSQSIN LADREQVLSLLAIRFTPDGEGPDGVVELALSGGGTIALDVECIEAQLTDVSGAWETAAKPHHPDSE
Sequences:
>Translated_146_residues MSGLKLLALDTEDLSIISTHMQDSVFKLKDVAFEPRQGQFTLSANRFVWESASKKNLPPERCRSVIFLKRVSAVRSQSIN LADREQVLSLLAIRFTPDGEGPDGVVELALSGGGTIALDVECIEAQLTDVSGAWETAAKPHHPDSE >Mature_145_residues SGLKLLALDTEDLSIISTHMQDSVFKLKDVAFEPRQGQFTLSANRFVWESASKKNLPPERCRSVIFLKRVSAVRSQSINL ADREQVLSLLAIRFTPDGEGPDGVVELALSGGGTIALDVECIEAQLTDVSGAWETAAKPHHPDSE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15920; Mature: 15789
Theoretical pI: Translated: 4.79; Mature: 4.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSGLKLLALDTEDLSIISTHMQDSVFKLKDVAFEPRQGQFTLSANRFVWESASKKNLPPE CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEECCCCCCCCCHH RCRSVIFLKRVSAVRSQSINLADREQVLSLLAIRFTPDGEGPDGVVELALSGGGTIALDV HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCCCEEEEEE ECIEAQLTDVSGAWETAAKPHHPDSE EEEEEECCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure SGLKLLALDTEDLSIISTHMQDSVFKLKDVAFEPRQGQFTLSANRFVWESASKKNLPPE CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCEEEECCCCCCCCCHH RCRSVIFLKRVSAVRSQSINLADREQVLSLLAIRFTPDGEGPDGVVELALSGGGTIALDV HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHEEECCCCCCCCCEEEEEECCCCEEEEEE ECIEAQLTDVSGAWETAAKPHHPDSE EEEEEECCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA