Definition Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence.
Accession NC_003062
Length 2,841,580

Click here to switch to the map view.

The map label for this gene is 159184346

Identifier: 159184346

GI number: 159184346

Start: 495598

End: 496029

Strand: Direct

Name: 159184346

Synonym: Atu0504

Alternate gene names: NA

Gene position: 495598-496029 (Clockwise)

Preceding gene: 15887850

Following gene: 15887852

Centisome position: 17.44

GC content: 64.81

Gene sequence:

>432_bases
ATGAAAGCACCACTGCGATCCCACGGTTTCGACAAGCCCTCGGACCTCGATGACCATCTGGCCGAACTGGACGAAGAGGC
TGAGGCGATAGCTGCGGAAGCAAAGACGGAAAAAACCGCGGTCAAGAGGACGCGTGCTTCCCATGCCATCGATCCGTCGC
TGCGCGCCGAACTGGAGGAGCTTCGCAAACAGCTCGACAAGATCCGCCGCGACGTCAAACGGCTGGAGGCCGCGCAGTAT
CCCCGCCACAGGCCCGCACAGCTGCACCATGAGCGTGACCGCGAGAATTCCCGCCTGATGACGGTGGTGCGCTCCGTCGC
CGTCACCTCGCTCGCCAGCCGCATCTTTGCGTCTTCGCCCGTCATGGCGGCGCTGGTGGCCGTGGTGCCGTTCGCGCTTG
GCCTTGCCGCCCGGCGCAGCGAAGGGTCATAG

Upstream 100 bases:

>100_bases
CCATCGCTTTTCGTGCATCCTTTGCCGGGCTGAGGCGTTGAAAAGCGTGACCGGGCAAAACGCCCGCTGCCACACAATCA
GTACGCCTCAGGAGACAGCG

Downstream 100 bases:

>100_bases
CCGCCGCCGGCGACGGCAGCCTCCGTTCAATCGGAGCAGCCTTGCGGGATCCCTGCGGCGACCGGATGTGTCAGCTCCGG
CTGATGCCCGAGGGTGGAGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MKAPLRSHGFDKPSDLDDHLAELDEEAEAIAAEAKTEKTAVKRTRASHAIDPSLRAELEELRKQLDKIRRDVKRLEAAQY
PRHRPAQLHHERDRENSRLMTVVRSVAVTSLASRIFASSPVMAALVAVVPFALGLAARRSEGS

Sequences:

>Translated_143_residues
MKAPLRSHGFDKPSDLDDHLAELDEEAEAIAAEAKTEKTAVKRTRASHAIDPSLRAELEELRKQLDKIRRDVKRLEAAQY
PRHRPAQLHHERDRENSRLMTVVRSVAVTSLASRIFASSPVMAALVAVVPFALGLAARRSEGS
>Mature_143_residues
MKAPLRSHGFDKPSDLDDHLAELDEEAEAIAAEAKTEKTAVKRTRASHAIDPSLRAELEELRKQLDKIRRDVKRLEAAQY
PRHRPAQLHHERDRENSRLMTVVRSVAVTSLASRIFASSPVMAALVAVVPFALGLAARRSEGS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15910; Mature: 15910

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAPLRSHGFDKPSDLDDHLAELDEEAEAIAAEAKTEKTAVKRTRASHAIDPSLRAELEE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LRKQLDKIRRDVKRLEAAQYPRHRPAQLHHERDRENSRLMTVVRSVAVTSLASRIFASSP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VMAALVAVVPFALGLAARRSEGS
HHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKAPLRSHGFDKPSDLDDHLAELDEEAEAIAAEAKTEKTAVKRTRASHAIDPSLRAELEE
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
LRKQLDKIRRDVKRLEAAQYPRHRPAQLHHERDRENSRLMTVVRSVAVTSLASRIFASSP
HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
VMAALVAVVPFALGLAARRSEGS
HHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA