Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184315
Identifier: 159184315
GI number: 159184315
Start: 456537
End: 457178
Strand: Direct
Name: 159184315
Synonym: Atu0462
Alternate gene names: NA
Gene position: 456537-457178 (Clockwise)
Preceding gene: 159184314
Following gene: 159184317
Centisome position: 16.07
GC content: 60.12
Gene sequence:
>642_bases ATGGGTTACGTGCTTTCCCAACGCAGCCTTGCGCGCCTTGACGGCGTGCATCCTGACCTCGTGCGTGTTGTCCGGCGCGC CATCCAGATCACCGAGATTGATTTCGTGGTGACCGAAGGTGTGCGGACGTTGGAAAAACAGAAGGACATGGTTGCGCGCG GCGCTTCCAAGACCATGAACAGCCGACATTTGAAGGCTGCGAACGGTTACAGTCATGCGGTCGATCTGGCGGCGCTGGTC GGCGGAAGCGTGGTTTGGGACTGGCCGCTTTATGCCAAGCTCGCGAAGGCCATGAAACAGGCGGCAAAGGAACTCGGCAT TCCGCTGGAATGGGGCGGTGACTGGAAGTCCTTTAAGGATGGCCCCCACTTCCAGTTGCCGTGGAAACAATACCCTTCGG CGGGGCCTGTCGCTGGCAAGAAATATACCGCCGAAACCGAGACGCAGGCCAAGTCCAAGGCGCTGGCGATCTTGGGCGGT GGCGTCAGCACCGCCGTTCCGGTTGGACAGGAACCTTTGACGAAGGCTGTTGAGGTCGTCTCGGCGCAGCAGGGCGAGCT TTCCTCCGGGGAATGGGCGCGAATGGCAATCGCCGTCTTCATCGTCGGTATCTCCGTCTATCTTGCGTGGCGGAAACTCT GA
Upstream 100 bases:
>100_bases GCCACGCCATCCTCTTTCCTGACCCCGCGCCGCTTCGGGCGGACGGACGAGAACTAACCGGCTTCCTGCCGACAATCCCC CTGAAAACTTGGAGACTATA
Downstream 100 bases:
>100_bases TGCGGATTTTTGACGCTGCATTGATCGGGGGCGGCATCGTTATCGGTGCCGCTCTCATGGCTGCGCCCGCCTACTTTGTC GGCAAGGGGGCAGGAAAAGC
Product: endolysin
Products: NA
Alternate protein names: Phage Endolysin; Phage-Related Protein; Bacteriophage P7 Related Protein; Phagelysin; Phage Protein; Phage Capsid Scaffolding Protein; Peptidase
Number of amino acids: Translated: 213; Mature: 212
Protein sequence:
>213_residues MGYVLSQRSLARLDGVHPDLVRVVRRAIQITEIDFVVTEGVRTLEKQKDMVARGASKTMNSRHLKAANGYSHAVDLAALV GGSVVWDWPLYAKLAKAMKQAAKELGIPLEWGGDWKSFKDGPHFQLPWKQYPSAGPVAGKKYTAETETQAKSKALAILGG GVSTAVPVGQEPLTKAVEVVSAQQGELSSGEWARMAIAVFIVGISVYLAWRKL
Sequences:
>Translated_213_residues MGYVLSQRSLARLDGVHPDLVRVVRRAIQITEIDFVVTEGVRTLEKQKDMVARGASKTMNSRHLKAANGYSHAVDLAALV GGSVVWDWPLYAKLAKAMKQAAKELGIPLEWGGDWKSFKDGPHFQLPWKQYPSAGPVAGKKYTAETETQAKSKALAILGG GVSTAVPVGQEPLTKAVEVVSAQQGELSSGEWARMAIAVFIVGISVYLAWRKL >Mature_212_residues GYVLSQRSLARLDGVHPDLVRVVRRAIQITEIDFVVTEGVRTLEKQKDMVARGASKTMNSRHLKAANGYSHAVDLAALVG GSVVWDWPLYAKLAKAMKQAAKELGIPLEWGGDWKSFKDGPHFQLPWKQYPSAGPVAGKKYTAETETQAKSKALAILGGG VSTAVPVGQEPLTKAVEVVSAQQGELSSGEWARMAIAVFIVGISVYLAWRKL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23084; Mature: 22953
Theoretical pI: Translated: 10.22; Mature: 10.22
Prosite motif: PS00211 ABC_TRANSPORTER_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGYVLSQRSLARLDGVHPDLVRVVRRAIQITEIDFVVTEGVRTLEKQKDMVARGASKTMN CCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC SRHLKAANGYSHAVDLAALVGGSVVWDWPLYAKLAKAMKQAAKELGIPLEWGGDWKSFKD CCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GPHFQLPWKQYPSAGPVAGKKYTAETETQAKSKALAILGGGVSTAVPVGQEPLTKAVEVV CCCEECCHHHCCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCHHCCCCCCHHHHHHHHHH SAQQGELSSGEWARMAIAVFIVGISVYLAWRKL HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GYVLSQRSLARLDGVHPDLVRVVRRAIQITEIDFVVTEGVRTLEKQKDMVARGASKTMN CCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHC SRHLKAANGYSHAVDLAALVGGSVVWDWPLYAKLAKAMKQAAKELGIPLEWGGDWKSFKD CCCCCCCCCCHHHHHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC GPHFQLPWKQYPSAGPVAGKKYTAETETQAKSKALAILGGGVSTAVPVGQEPLTKAVEVV CCCEECCHHHCCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCHHCCCCCCHHHHHHHHHH SAQQGELSSGEWARMAIAVFIVGISVYLAWRKL HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA