Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184314
Identifier: 159184314
GI number: 159184314
Start: 455333
End: 456493
Strand: Direct
Name: 159184314
Synonym: Atu0461
Alternate gene names: NA
Gene position: 455333-456493 (Clockwise)
Preceding gene: 159184313
Following gene: 159184315
Centisome position: 16.02
GC content: 57.88
Gene sequence:
>1161_bases ATGAAACCGCGCGTGGAAGTTAGTATCGACGGCGTGCCAGTGGCAGGCCATTTCTATGAGCGTTTGCTTTCCCTTACCGT CACTGACGAAGAGGGAATGAAATCCGACACGGTGGATATCGAACTGAATGACGGTCCGCCGAACTTTCTGGCAATCCCGC GTAAGGGGGCCATCATTTCGGTCAAGATGGGTTTCGGTGACGATCTTGTGCCGAAAGGTGTTTTCACCGCGGACAAAGTC AATCTCGATTGCCTGCCCTATAAAATGTCGATCTCCGGCAAGGCTGCGGACCTTCGCAGCGGAAAGCTGAAAGAGCGGCA GGAAAGGTCATGGGATAAATCGAAGCTCGGCGATATCCTGTCACAGATCGCCAGCGAAAGCGGGCTAACCCCTGCCGTTG ATGATGACCTTGCGGACTTTGAATATGACTGGCTGGCGCAACAGGACGAAAGCAACATCAATTTCCTGCGGCGGCTGGCG GAGCGGCATAACGGCCTGTTCGCGGTCAAACAAAGGCGACTGATCTTCACGCGGCTTGGTTCCGGGTTGTCTGCATCCGG CGCGCCGCTCGGTTCGATCATCCTGACGCCCGAGAAAATCAAGGTTGGAAGCCTGAAAGTCGAGATTAACGACCGCACGA AATACAGCAAGGTCGTGGCCTACTATCAGGATTCCGACAAGGCGGAACGCGTGGAAATCGATGCGGATGCAGATGCGGAC GGCGATAGCGTTTATCGTCTGCCGGAACCTTATGCGTCGCCCGCAGAAGCCGACAAGGCAGCGCAGGCCAAGGCCAAGGA ATTGCAGCGCGGCGAAGGCTCGGTTTCTGTCACAGTCATTGGCGATGCAGGTATCGACGCAGGCTTGCCGCTGCTGTTCG CGGATGTCCGCCCCGGCGTTGACGGTGTGCCCTACATCATCAAGACGGCCAAAACGTCCTACACAAAAACCGGTGCTCTT GAAGTGGCGGTTTCAGGCAGGCTCTACGATGGCAAATCCGCAACCGAAAAATCGGCCGGCACGGAAAGCAGCGGTTCCAG CGCCACCCCGGACGCCTCGAAAGCAACCGGCAAGGTTGCCCCAAACAGCGCGCCCGGTACGCCCGCCACGCCATCCTCTT TCCTGACCCCGCGCCGCTTCGGGCGGACGGACGAGAACTAA
Upstream 100 bases:
>100_bases CCGCGCTCGGGCCTGTCCTTCCGCTCGGCACAAAAATTACCATGCCGGACATTCCTTCCACCAGCACGGCCAAGCCGTTA ACCAGCCTTTGGGACTGACT
Downstream 100 bases:
>100_bases CCGGCTTCCTGCCGACAATCCCCCTGAAAACTTGGAGACTATAATGGGTTACGTGCTTTCCCAACGCAGCCTTGCGCGCC TTGACGGCGTGCATCCTGAC
Product: hypothetical protein
Products: NA
Alternate protein names: Phage Late Control D Family Protein; Phage Late Control D; Phage Late Control Gene D Protein; Tail Protein D; Phage Protein D; Late Control Gene D Protein; Phage-Related Tail Protein; Regulator Of Late Gene Expression; Pyocin R2_PP Tail Formation; Prophage Tail Protein; Fels-2 Prophage Protein; Phage Late Control; Phage Protein; Gene D Protein; Phage-Related Late Control Gene Protein; Phage Late Control D Protein; Phage Tail Protein D; Pyocin R2_PP Tail Formation GPD; Cytoplasmic Protein; Phage Late Control Gene D Protein GpD; Gene Late Control D Protein; Bacteriophage P2 GpD Protein; Bacteriophage Late Gene Regulator; Bacteriophage Late Control D Protein; Bacteriophage-Related Tail D Protein; Prophage; Bacteriophage P2 Tail Protein GPD; Phage-Like Protein; Phage Regulator; Phage Protein D-Like; Regulator Of Late Phage Gene Expression; Phage Late Control Gene D Protein-Like Protein; Phage Late Control Gene D Protein GPD; Late Control Gene D Protein Prophage; Bacteriophage Late Gene Control Protein D; Bacteriophage Tail Protein D; Late Gene Regulator
Number of amino acids: Translated: 386; Mature: 386
Protein sequence:
>386_residues MKPRVEVSIDGVPVAGHFYERLLSLTVTDEEGMKSDTVDIELNDGPPNFLAIPRKGAIISVKMGFGDDLVPKGVFTADKV NLDCLPYKMSISGKAADLRSGKLKERQERSWDKSKLGDILSQIASESGLTPAVDDDLADFEYDWLAQQDESNINFLRRLA ERHNGLFAVKQRRLIFTRLGSGLSASGAPLGSIILTPEKIKVGSLKVEINDRTKYSKVVAYYQDSDKAERVEIDADADAD GDSVYRLPEPYASPAEADKAAQAKAKELQRGEGSVSVTVIGDAGIDAGLPLLFADVRPGVDGVPYIIKTAKTSYTKTGAL EVAVSGRLYDGKSATEKSAGTESSGSSATPDASKATGKVAPNSAPGTPATPSSFLTPRRFGRTDEN
Sequences:
>Translated_386_residues MKPRVEVSIDGVPVAGHFYERLLSLTVTDEEGMKSDTVDIELNDGPPNFLAIPRKGAIISVKMGFGDDLVPKGVFTADKV NLDCLPYKMSISGKAADLRSGKLKERQERSWDKSKLGDILSQIASESGLTPAVDDDLADFEYDWLAQQDESNINFLRRLA ERHNGLFAVKQRRLIFTRLGSGLSASGAPLGSIILTPEKIKVGSLKVEINDRTKYSKVVAYYQDSDKAERVEIDADADAD GDSVYRLPEPYASPAEADKAAQAKAKELQRGEGSVSVTVIGDAGIDAGLPLLFADVRPGVDGVPYIIKTAKTSYTKTGAL EVAVSGRLYDGKSATEKSAGTESSGSSATPDASKATGKVAPNSAPGTPATPSSFLTPRRFGRTDEN >Mature_386_residues MKPRVEVSIDGVPVAGHFYERLLSLTVTDEEGMKSDTVDIELNDGPPNFLAIPRKGAIISVKMGFGDDLVPKGVFTADKV NLDCLPYKMSISGKAADLRSGKLKERQERSWDKSKLGDILSQIASESGLTPAVDDDLADFEYDWLAQQDESNINFLRRLA ERHNGLFAVKQRRLIFTRLGSGLSASGAPLGSIILTPEKIKVGSLKVEINDRTKYSKVVAYYQDSDKAERVEIDADADAD GDSVYRLPEPYASPAEADKAAQAKAKELQRGEGSVSVTVIGDAGIDAGLPLLFADVRPGVDGVPYIIKTAKTSYTKTGAL EVAVSGRLYDGKSATEKSAGTESSGSSATPDASKATGKVAPNSAPGTPATPSSFLTPRRFGRTDEN
Specific function: Unknown
COG id: COG3500
COG function: function code R; Phage protein D
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 41264; Mature: 41264
Theoretical pI: Translated: 5.00; Mature: 5.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPRVEVSIDGVPVAGHFYERLLSLTVTDEEGMKSDTVDIELNDGPPNFLAIPRKGAIIS CCCCEEEEECCEEEHHHHHHHHHEEEEECCCCCCCCEEEEEECCCCCCEEEECCCCCEEE VKMGFGDDLVPKGVFTADKVNLDCLPYKMSISGKAADLRSGKLKERQERSWDKSKLGDIL EEECCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCHHHHHHHH SQIASESGLTPAVDDDLADFEYDWLAQQDESNINFLRRLAERHNGLFAVKQRRLIFTRLG HHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCEEEEHHHEEEEEHHC SGLSASGAPLGSIILTPEKIKVGSLKVEINDRTKYSKVVAYYQDSDKAERVEIDADADAD CCCCCCCCCCCEEEECCCEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCC GDSVYRLPEPYASPAEADKAAQAKAKELQRGEGSVSVTVIGDAGIDAGLPLLFADVRPGV CCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCC DGVPYIIKTAKTSYTKTGALEVAVSGRLYDGKSATEKSAGTESSGSSATPDASKATGKVA CCCCEEEEECCCCCCCCCEEEEEEECEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC PNSAPGTPATPSSFLTPRRFGRTDEN CCCCCCCCCCCHHCCCHHHCCCCCCC >Mature Secondary Structure MKPRVEVSIDGVPVAGHFYERLLSLTVTDEEGMKSDTVDIELNDGPPNFLAIPRKGAIIS CCCCEEEEECCEEEHHHHHHHHHEEEEECCCCCCCCEEEEEECCCCCCEEEECCCCCEEE VKMGFGDDLVPKGVFTADKVNLDCLPYKMSISGKAADLRSGKLKERQERSWDKSKLGDIL EEECCCCCCCCCCCEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHHHHCCCHHHHHHHH SQIASESGLTPAVDDDLADFEYDWLAQQDESNINFLRRLAERHNGLFAVKQRRLIFTRLG HHHHHHCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHHCCEEEEHHHEEEEEHHC SGLSASGAPLGSIILTPEKIKVGSLKVEINDRTKYSKVVAYYQDSDKAERVEIDADADAD CCCCCCCCCCCEEEECCCEEEEEEEEEEECCCCCEEEEEEEEECCCCCEEEEEECCCCCC GDSVYRLPEPYASPAEADKAAQAKAKELQRGEGSVSVTVIGDAGIDAGLPLLFADVRPGV CCCEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCEEEEECCCCC DGVPYIIKTAKTSYTKTGALEVAVSGRLYDGKSATEKSAGTESSGSSATPDASKATGKVA CCCCEEEEECCCCCCCCCEEEEEEECEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCC PNSAPGTPATPSSFLTPRRFGRTDEN CCCCCCCCCCCHHCCCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA