Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is cat1 [H]
Identifier: 159184290
GI number: 159184290
Start: 389381
End: 390877
Strand: Direct
Name: cat1 [H]
Synonym: Atu0396
Alternate gene names: 159184290
Gene position: 389381-390877 (Clockwise)
Preceding gene: 159184289
Following gene: 159184291
Centisome position: 13.7
GC content: 59.32
Gene sequence:
>1497_bases ATGCTTGAAAAGCGTATCCGCAACGCGTCCCTCTTGAACAGGATCGTCAGCGCCGAAGAGGCCGCCAGTCTCATTCAGGA TGGCATGACGGTGGGCATGAGCGGTTTTACGCGCGCCGGTGAAGCCAAGGCAGTGCCGCTGGCGCTGGCCGAGCGCGCCA AGACCAACCCCATGAAAATCACCCTGATGACCGGCGCCTCCCTCGGCAACGATCTCGACAAGACCATGGTCGAGGCCGGC ATGCTGGCGCGCCGCATGCCGTTCCAGTCCGATCCGGCTTTGCGCAAGGCGATCAATGACGGCAGGGTGATGTTCATCGA TCAGCATCTTTCCGAAACGGTCGAGCAATTGCGCGGCGGTCAGATCCATGGCGTTGATATCGCCATTGTCGAGGCGGTGG CAATCACGGCGGAAGGCGGCATCGTACCCACCACCTCGGTTGGTAATTCCGCAAGTTTCGCCATTCTGGCCGATAAGGTC ATCGTCGAGATCAACCTGTCGCAGCCCGAGGTGCTGGAAGGGCTGCATGATATCTTCATTCCCGCCAAGCGCCCGACCCG TATGCCCATCCCCGTCGTGGCGACGGATAGCCGTGTCGGCCTGCCTTTCATTCCGGTGCCGCCGGAAAAGATCGCTGCCA TTGTGCTGAGCGACAAGAGCGACAGTTTTTCGACAGTGCTGCCGCCGGATGACGAGACGAAGGCGATTGCCGGCCATCTC ACCGAATTCCTGCTGAATGAGGTCCGTCATGGCCGCATGACGCATGAACTCCAGCCGTTGCAGGCAGGCATCGGCACCAT CGCCAATGCCGTGATGCACGGGTTCATCGATACGCCGTTTCACGATCTCAAAATGTATTCGGAGGTCCTGCAGGATTCGA CCTTCGAACTGTTCGATGCGGGCAAGCTGACCTTCGCCTCCGGTTCGTCAATCACGCTCTCCTCCGCCATGAACGAGCAG GTCATGCCACGATTGTCCGAGTATAAGAGCAGACTGATCCTTCGCCCGCAGGAGGTCAGCAACCATCCGGAAGTCATCCG CCGCCTCGGCATCATCGGCATCAACACAGCTCTGGAATTCGATATTTACGGAAATGTCAATTCCACTCATGTCGGTGGCA CTCACATGATGAACGGCATCGGCGGTTCGGGTGATTTTGCCCGCAACGCTTACATGTCCATCTTCGTGACGAAATCCATC GCCAAGGGCGGTGCCATTTCCAGCGTCGTGCCCATGGTCAGCCATGTCGACCATACCGAACACGATGTCGATATTCTCGT CACAGAAACGGGCCTAGCCGATCTGCGCGGTCTGGCCCCGCGCGAGCGCGCAGCGGTCATCATCGCAAACTGCGTGCATC CCAGCTATCGCGATGCGCTGACGGATTATTACCAGCGAGCAGCGGCGCGGGGCGGGCACACGCCGCATCTCATCGAAGAA GCGCTGTCATGGCACAATGCGCTTCGGGAAAGAGGCACCATGCTGCCGCAGCGATAG
Upstream 100 bases:
>100_bases GATCTATGTCAGTTTCATCGATCAAACTGCACGCCATAGTCGCCCGAGAGGTGGCCAACCGAATGCCGTGCCATCGTGAT GACAGATCATGGAGAAGTGC
Downstream 100 bases:
>100_bases GCGGGCGTTTTCCGGCCTGTCGCCCGGCAATTGGGTCCGTTCGGACACACCGGGGCGGAAAGTGTCGCTGATCCGCGTTG GTTGCTGGCGCGGCAGTTCC
Product: coenzyme A transferase
Products: propionate; succinyl-CoA [C]
Alternate protein names: NA
Number of amino acids: Translated: 498; Mature: 498
Protein sequence:
>498_residues MLEKRIRNASLLNRIVSAEEAASLIQDGMTVGMSGFTRAGEAKAVPLALAERAKTNPMKITLMTGASLGNDLDKTMVEAG MLARRMPFQSDPALRKAINDGRVMFIDQHLSETVEQLRGGQIHGVDIAIVEAVAITAEGGIVPTTSVGNSASFAILADKV IVEINLSQPEVLEGLHDIFIPAKRPTRMPIPVVATDSRVGLPFIPVPPEKIAAIVLSDKSDSFSTVLPPDDETKAIAGHL TEFLLNEVRHGRMTHELQPLQAGIGTIANAVMHGFIDTPFHDLKMYSEVLQDSTFELFDAGKLTFASGSSITLSSAMNEQ VMPRLSEYKSRLILRPQEVSNHPEVIRRLGIIGINTALEFDIYGNVNSTHVGGTHMMNGIGGSGDFARNAYMSIFVTKSI AKGGAISSVVPMVSHVDHTEHDVDILVTETGLADLRGLAPRERAAVIIANCVHPSYRDALTDYYQRAAARGGHTPHLIEE ALSWHNALRERGTMLPQR
Sequences:
>Translated_498_residues MLEKRIRNASLLNRIVSAEEAASLIQDGMTVGMSGFTRAGEAKAVPLALAERAKTNPMKITLMTGASLGNDLDKTMVEAG MLARRMPFQSDPALRKAINDGRVMFIDQHLSETVEQLRGGQIHGVDIAIVEAVAITAEGGIVPTTSVGNSASFAILADKV IVEINLSQPEVLEGLHDIFIPAKRPTRMPIPVVATDSRVGLPFIPVPPEKIAAIVLSDKSDSFSTVLPPDDETKAIAGHL TEFLLNEVRHGRMTHELQPLQAGIGTIANAVMHGFIDTPFHDLKMYSEVLQDSTFELFDAGKLTFASGSSITLSSAMNEQ VMPRLSEYKSRLILRPQEVSNHPEVIRRLGIIGINTALEFDIYGNVNSTHVGGTHMMNGIGGSGDFARNAYMSIFVTKSI AKGGAISSVVPMVSHVDHTEHDVDILVTETGLADLRGLAPRERAAVIIANCVHPSYRDALTDYYQRAAARGGHTPHLIEE ALSWHNALRERGTMLPQR >Mature_498_residues MLEKRIRNASLLNRIVSAEEAASLIQDGMTVGMSGFTRAGEAKAVPLALAERAKTNPMKITLMTGASLGNDLDKTMVEAG MLARRMPFQSDPALRKAINDGRVMFIDQHLSETVEQLRGGQIHGVDIAIVEAVAITAEGGIVPTTSVGNSASFAILADKV IVEINLSQPEVLEGLHDIFIPAKRPTRMPIPVVATDSRVGLPFIPVPPEKIAAIVLSDKSDSFSTVLPPDDETKAIAGHL TEFLLNEVRHGRMTHELQPLQAGIGTIANAVMHGFIDTPFHDLKMYSEVLQDSTFELFDAGKLTFASGSSITLSSAMNEQ VMPRLSEYKSRLILRPQEVSNHPEVIRRLGIIGINTALEFDIYGNVNSTHVGGTHMMNGIGGSGDFARNAYMSIFVTKSI AKGGAISSVVPMVSHVDHTEHDVDILVTETGLADLRGLAPRERAAVIIANCVHPSYRDALTDYYQRAAARGGHTPHLIEE ALSWHNALRERGTMLPQR
Specific function: Forms succinyl-CoA from succinate and acetyl-CoA [H]
COG id: COG0427
COG function: function code C; Acetyl-CoA hydrolase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the acetyl-CoA hydrolase/transferase family [H]
Homologues:
Organism=Escherichia coli, GI1789287, Length=487, Percent_Identity=44.7638603696099, Blast_Score=412, Evalue=1e-116, Organism=Saccharomyces cerevisiae, GI6319456, Length=514, Percent_Identity=44.5525291828794, Blast_Score=426, Evalue=1e-120,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003702 - InterPro: IPR006472 - InterPro: IPR017821 [H]
Pfam domain/function: PF02550 AcetylCoA_hydro; PF04223 CitF [H]
EC number: NA
Molecular weight: Translated: 53895; Mature: 53895
Theoretical pI: Translated: 6.33; Mature: 6.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLEKRIRNASLLNRIVSAEEAASLIQDGMTVGMSGFTRAGEAKAVPLALAERAKTNPMKI CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEE TLMTGASLGNDLDKTMVEAGMLARRMPFQSDPALRKAINDGRVMFIDQHLSETVEQLRGG EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHCCC QIHGVDIAIVEAVAITAEGGIVPTTSVGNSASFAILADKVIVEINLSQPEVLEGLHDIFI CCCCEEEEEEEEEEEEECCCEEECCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHCC PAKRPTRMPIPVVATDSRVGLPFIPVPPEKIAAIVLSDKSDSFSTVLPPDDETKAIAGHL CCCCCCCCCCEEEECCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHH TEFLLNEVRHGRMTHELQPLQAGIGTIANAVMHGFIDTPFHDLKMYSEVLQDSTFELFDA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCC GKLTFASGSSITLSSAMNEQVMPRLSEYKSRLILRPQEVSNHPEVIRRLGIIGINTALEF CCEEEECCCCEEEHHHHCHHHHHHHHHHHHHEEECCHHHCCCHHHHHHHCCEEECCEEEE DIYGNVNSTHVGGTHMMNGIGGSGDFARNAYMSIFVTKSIAKGGAISSVVPMVSHVDHTE EEECCCCCCCCCCHHHHCCCCCCCCHHHHHHEEEEEEHHHHCCCCHHHHHHHHHHCCCCC HDVDILVTETGLADLRGLAPRERAAVIIANCVHPSYRDALTDYYQRAAARGGHTPHLIEE CCEEEEEECCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHH ALSWHNALRERGTMLPQR HHHHHHHHHHHCCCCCCC >Mature Secondary Structure MLEKRIRNASLLNRIVSAEEAASLIQDGMTVGMSGFTRAGEAKAVPLALAERAKTNPMKI CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCEEE TLMTGASLGNDLDKTMVEAGMLARRMPFQSDPALRKAINDGRVMFIDQHLSETVEQLRGG EEEECCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHCCC QIHGVDIAIVEAVAITAEGGIVPTTSVGNSASFAILADKVIVEINLSQPEVLEGLHDIFI CCCCEEEEEEEEEEEEECCCEEECCCCCCCCEEEEEEEEEEEEEECCCCHHHHHHHHHCC PAKRPTRMPIPVVATDSRVGLPFIPVPPEKIAAIVLSDKSDSFSTVLPPDDETKAIAGHL CCCCCCCCCCEEEECCCCCCCCCCCCCHHHEEEEEEECCCCCCCCCCCCCCCHHHHHHHH TEFLLNEVRHGRMTHELQPLQAGIGTIANAVMHGFIDTPFHDLKMYSEVLQDSTFELFDA HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHCC GKLTFASGSSITLSSAMNEQVMPRLSEYKSRLILRPQEVSNHPEVIRRLGIIGINTALEF CCEEEECCCCEEEHHHHCHHHHHHHHHHHHHEEECCHHHCCCHHHHHHHCCEEECCEEEE DIYGNVNSTHVGGTHMMNGIGGSGDFARNAYMSIFVTKSIAKGGAISSVVPMVSHVDHTE EEECCCCCCCCCCHHHHCCCCCCCCHHHHHHEEEEEEHHHHCCCCHHHHHHHHHHCCCCC HDVDILVTETGLADLRGLAPRERAAVIIANCVHPSYRDALTDYYQRAAARGGHTPHLIEE CCEEEEEECCCHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCCCHHHHHH ALSWHNALRERGTMLPQR HHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: propionyl-CoA; succinate [C]
Specific reaction: propionyl-CoA + succinate = propionate + succinyl-CoA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8550525 [H]