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The map label for this gene is ybeY [C]

Identifier: 159184274

GI number: 159184274

Start: 352153

End: 352659

Strand: Direct

Name: ybeY [C]

Synonym: Atu0358

Alternate gene names: 159184274

Gene position: 352153-352659 (Clockwise)

Preceding gene: 159184273

Following gene: 159184275

Centisome position: 12.39

GC content: 55.03

Gene sequence:

>507_bases
ATGGCGGCTCTGGATATTCAAATCAGCGTTGAGGCCGAAGGCTGGTCCTCGGAAGAGAACTTGGCTGCCTTTGCCACCAA
GGTGCTGAATGCGGCGGTCGATTTTCTGAAACGGGAAGAGGAGCAACCCTTCCCGAAAATGCCGGTCGAACTGTCGCTGG
TCTTCACCGATGACGAAAATATCCGGGAAATCAACGCCGAATGGCGCGACAAGGACAAGGCGACCAATGTCTTGTCTTTC
CCCGCTTTTCCGCTGGAGCCGGGCGGAATGCCCGGCCCGATGCTGGGCGATATCGTCATCGCTCGCGAGACGGTTGAACG
CGAGGCTCTTGAACTTGACAAGAGTTTCGAGGATCATCTGACCCATCTTCTCGTTCATGGGTTCCTGCATTTGTTTGGTT
ATGACCACATGGACGAGGAAGAAGCGGAAGAAATGGAGTCGCTTGAGACTCGCATTTTGGCGGTGCTTGGCCTATCTGAT
CCCTACGCGGGTCAGGAGCCGCTTTAA

Upstream 100 bases:

>100_bases
GTCGTGCGCCATCCGATGGTGGCGCGCATCGTGCGGGCTTACGAATCCCACACGGCGGTGCCGGATGAGAGCCTTCCGAA
GGGCAACTGACGTAAAGACA

Downstream 100 bases:

>100_bases
ATATTGTCTGGAGCCATGAACGAACATTCTGCACGACCTGCCAATGAGGGCAGAGAAAACGGCGAGCAGTCCTCTTCGGA
GGAGGGCAGTAGTCACTTAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MAALDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPKMPVELSLVFTDDENIREINAEWRDKDKATNVLSF
PAFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHLTHLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSD
PYAGQEPL

Sequences:

>Translated_168_residues
MAALDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPKMPVELSLVFTDDENIREINAEWRDKDKATNVLSF
PAFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHLTHLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSD
PYAGQEPL
>Mature_167_residues
AALDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPKMPVELSLVFTDDENIREINAEWRDKDKATNVLSFP
AFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHLTHLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDP
YAGQEPL

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=163, Percent_Identity=42.9447852760736, Blast_Score=100, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_AGRT5 (Q8UID9)

Other databases:

- EMBL:   AE007869
- PIR:   AF2620
- PIR:   F97402
- RefSeq:   NP_353390.2
- ProteinModelPortal:   Q8UID9
- SMR:   Q8UID9
- STRING:   Q8UID9
- GeneID:   1132396
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu0358
- eggNOG:   COG0319
- HOGENOM:   HBG734136
- OMA:   DIIIARE
- PhylomeDB:   Q8UID9
- ProtClustDB:   CLSK800094
- BioCyc:   ATUM176299-1:ATU0358-MONOMER
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 18869; Mature: 18738

Theoretical pI: Translated: 3.98; Mature: 3.98

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAALDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPKMPVELSLVFTDDEN
CCEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC
IREINAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHL
HHCCCCHHCCHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
THLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPYAGQEPL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure 
AALDIQISVEAEGWSSEENLAAFATKVLNAAVDFLKREEEQPFPKMPVELSLVFTDDEN
CEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCC
IREINAEWRDKDKATNVLSFPAFPLEPGGMPGPMLGDIVIARETVEREALELDKSFEDHL
HHCCCCHHCCHHHHCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHH
THLLVHGFLHLFGYDHMDEEEAEEMESLETRILAVLGLSDPYAGQEPL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194