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The map label for this gene is yecD [C]

Identifier: 159184237

GI number: 159184237

Start: 262523

End: 263083

Strand: Reverse

Name: yecD [C]

Synonym: Atu0265

Alternate gene names: 159184237

Gene position: 263083-262523 (Counterclockwise)

Preceding gene: 15887617

Following gene: 15887614

Centisome position: 9.26

GC content: 61.68

Gene sequence:

>561_bases
ATGTCCTCGTCCAACACCGCACTTCTCGTCATCGACGTTCAGGAATCCTTTCGGCATGCCCCCTATTTCGAGGAAAGCGG
GCTTGCCGCCTATCTGGAGAAGCAGCAGGCACTGATCGACGGCGCCAAGGCAGCGGGAATCCCCGTCGTGCAAATCTTCC
ATGTCGATGGCGACCGGGCCTTCTCGAAAGACAGCGGTTATATCCGCGCGCTGGAGGGTGTGCGGATTACCCCTGATGTC
ACCTTTCACAAGAGCCGGCACTCGGCCTTCGCCGGCACCGGTCTCGAGATCTGGCTGACGCAGAGAGGCATAAACCGGCT
GATCGTTTCCGGCATCCGCACTGAGCAATGCTGCGAAACCACCACCCGGCACGCATCCGATCTCGGATATAGCGTCGATT
ACATCACCGAGGCGACGCTGACCTTTCCGATGACGCATCCCTCCGGCACGGTGTTCAGCGCGGATGACATCCGCAAGCGG
ACCGAGCTGGTGCTGGCCGGCCGCTTCGCGCGCATCGCCACTGTGAGCGAGGCACTTGCACCGCTGAAGGCGGCAGCCTG
A

Upstream 100 bases:

>100_bases
GGTATGGCCGGATTTGTCCTCCCTTTGTCGGTTTTTTTGCTTTTATCCGCATAGGAGAAGGAGAATTATGCTACCCATGA
CCACACTGGAGAATCATAAA

Downstream 100 bases:

>100_bases
TGGATAAAGGCGGCACACGCGTCATTCCCTTTTATACGCTTGTGCCGCCGCACGCGTTGCTGCTCGATATTGCCGGGCCA
TTGCAGGTGATCCGCTATGC

Product: hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSSSNTALLVIDVQESFRHAPYFEESGLAAYLEKQQALIDGAKAAGIPVVQIFHVDGDRAFSKDSGYIRALEGVRITPDV
TFHKSRHSAFAGTGLEIWLTQRGINRLIVSGIRTEQCCETTTRHASDLGYSVDYITEATLTFPMTHPSGTVFSADDIRKR
TELVLAGRFARIATVSEALAPLKAAA

Sequences:

>Translated_186_residues
MSSSNTALLVIDVQESFRHAPYFEESGLAAYLEKQQALIDGAKAAGIPVVQIFHVDGDRAFSKDSGYIRALEGVRITPDV
TFHKSRHSAFAGTGLEIWLTQRGINRLIVSGIRTEQCCETTTRHASDLGYSVDYITEATLTFPMTHPSGTVFSADDIRKR
TELVLAGRFARIATVSEALAPLKAAA
>Mature_185_residues
SSSNTALLVIDVQESFRHAPYFEESGLAAYLEKQQALIDGAKAAGIPVVQIFHVDGDRAFSKDSGYIRALEGVRITPDVT
FHKSRHSAFAGTGLEIWLTQRGINRLIVSGIRTEQCCETTTRHASDLGYSVDYITEATLTFPMTHPSGTVFSADDIRKRT
ELVLAGRFARIATVSEALAPLKAAA

Specific function: Unknown

COG id: COG1335

COG function: function code Q; Amidases related to nicotinamidase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the isochorismatase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000868 [H]

Pfam domain/function: PF00857 Isochorismatase [H]

EC number: NA

Molecular weight: Translated: 20245; Mature: 20114

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSSSNTALLVIDVQESFRHAPYFEESGLAAYLEKQQALIDGAKAAGIPVVQIFHVDGDRA
CCCCCCEEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
FSKDSGYIRALEGVRITPDVTFHKSRHSAFAGTGLEIWLTQRGINRLIVSGIRTEQCCET
CCCCCCEEEEECCEEECCCCEEECCCCCEECCCCEEEEEEHHCHHHHHHCCCCHHHHHHH
TTRHASDLGYSVDYITEATLTFPMTHPSGTVFSADDIRKRTELVLAGRFARIATVSEALA
HHHHHHHCCCEEHEEEEEEEEEEEECCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
PLKAAA
HHHCCC
>Mature Secondary Structure 
SSSNTALLVIDVQESFRHAPYFEESGLAAYLEKQQALIDGAKAAGIPVVQIFHVDGDRA
CCCCCEEEEEECHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCC
FSKDSGYIRALEGVRITPDVTFHKSRHSAFAGTGLEIWLTQRGINRLIVSGIRTEQCCET
CCCCCCEEEEECCEEECCCCEEECCCCCEECCCCEEEEEEHHCHHHHHHCCCCHHHHHHH
TTRHASDLGYSVDYITEATLTFPMTHPSGTVFSADDIRKRTELVLAGRFARIATVSEALA
HHHHHHHCCCEEHEEEEEEEEEEEECCCCCEEEHHHHHHHHHHHHHCCHHHHHHHHHHHH
PLKAAA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA