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The map label for this gene is glxA [H]

Identifier: 15887614

GI number: 15887614

Start: 261540

End: 262523

Strand: Reverse

Name: glxA [H]

Synonym: Atu0264

Alternate gene names: 15887614

Gene position: 262523-261540 (Counterclockwise)

Preceding gene: 159184237

Following gene: 159184236

Centisome position: 9.24

GC content: 61.59

Gene sequence:

>984_bases
ATGGATAAAGGCGGCACACGCGTCATTCCCTTTTATACGCTTGTGCCGCCGCACGCGTTGCTGCTCGATATTGCCGGGCC
ATTGCAGGTGATCCGCTATGCCAATAACGAGCAGAACGATGTTTTTTTCGACTGCCGCTACATCGCAGCACAGGAAAAGC
AGCAGTCCTCGATCGGCCTTGGCATTTGCGGGCTTGAAACACTGCCTGCCACCCTGCCGGAGAATGCCTTTCTGCTGATC
TCCGGCAGCACCTCGCGCTCCGAGAGCGAACCGGAAACCCGGCGGGAGCGGCAGGCATTGGCAGCATGGCTGCGCCGCGT
CGTGGGTCTCGACACGACAGTCATTTCCATCTGCTCCGGCGCATTGCTGGCGGGTGAGGCCGGGCTTTTCGACGGGCGGA
GCTGCACCACGCATAGCGACTGCATCGAGACGCTCCGCCGTGTCGCGCCCTTGTCCCAGGTGGCCGAAAACCGGCTGTTT
GTCGAGGATGGCAACCGTTTTTCCAGCGCAGGCATCTCCACCGGCATCGACCTGATGCTGCATGTGGTTTCGCGGCTGAC
ATCCCTCGCCGTCGCGGCGCGCATCGCCCAAACCATGGTCGTTTACCTCCGGCGCAACGGCAATGATCCGCAGATTTCCC
CCTGGCTGACCGGCCGCAACCACATGCACCCCGCCATCCACCGGGTGCAGGACCGGGTGATGGCCGAACCAGCGCGGGAC
TGGTCGCTGGAGAGGTTGGCCGATATCGCAGCACTCAGCGAAAGGCATCTGTCGCGCCTGTTTCGCGAGCATACCGGCAT
CAGCGTCATCGATTACGTCAACCTGATGCGGGTCAATCTGGCCCGTGACATTCTTTCAAATAGCCGTCTCGATATGGAAG
CCATCGCCGAGCGGGCGGGCTTTGCCTCTGCCCGGCATTTGCGGCGCGTCTGGCAACAGCATAATCGTTATCCGCCCAGC
CATTATCGCGGCTTTCAGGCCTGA

Upstream 100 bases:

>100_bases
CGGATGACATCCGCAAGCGGACCGAGCTGGTGCTGGCCGGCCGCTTCGCGCGCATCGCCACTGTGAGCGAGGCACTTGCA
CCGCTGAAGGCGGCAGCCTG

Downstream 100 bases:

>100_bases
TTTTCCCGGCTGTCACCCGCTCGCTGATGAGTGACATCAAAGGAATTGAATGGTTATGCAGGCGGGCAGTTGCTAACCTG
CGGCAAAGTCAGCAACAGGA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 327; Mature: 327

Protein sequence:

>327_residues
MDKGGTRVIPFYTLVPPHALLLDIAGPLQVIRYANNEQNDVFFDCRYIAAQEKQQSSIGLGICGLETLPATLPENAFLLI
SGSTSRSESEPETRRERQALAAWLRRVVGLDTTVISICSGALLAGEAGLFDGRSCTTHSDCIETLRRVAPLSQVAENRLF
VEDGNRFSSAGISTGIDLMLHVVSRLTSLAVAARIAQTMVVYLRRNGNDPQISPWLTGRNHMHPAIHRVQDRVMAEPARD
WSLERLADIAALSERHLSRLFREHTGISVIDYVNLMRVNLARDILSNSRLDMEAIAERAGFASARHLRRVWQQHNRYPPS
HYRGFQA

Sequences:

>Translated_327_residues
MDKGGTRVIPFYTLVPPHALLLDIAGPLQVIRYANNEQNDVFFDCRYIAAQEKQQSSIGLGICGLETLPATLPENAFLLI
SGSTSRSESEPETRRERQALAAWLRRVVGLDTTVISICSGALLAGEAGLFDGRSCTTHSDCIETLRRVAPLSQVAENRLF
VEDGNRFSSAGISTGIDLMLHVVSRLTSLAVAARIAQTMVVYLRRNGNDPQISPWLTGRNHMHPAIHRVQDRVMAEPARD
WSLERLADIAALSERHLSRLFREHTGISVIDYVNLMRVNLARDILSNSRLDMEAIAERAGFASARHLRRVWQQHNRYPPS
HYRGFQA
>Mature_327_residues
MDKGGTRVIPFYTLVPPHALLLDIAGPLQVIRYANNEQNDVFFDCRYIAAQEKQQSSIGLGICGLETLPATLPENAFLLI
SGSTSRSESEPETRRERQALAAWLRRVVGLDTTVISICSGALLAGEAGLFDGRSCTTHSDCIETLRRVAPLSQVAENRLF
VEDGNRFSSAGISTGIDLMLHVVSRLTSLAVAARIAQTMVVYLRRNGNDPQISPWLTGRNHMHPAIHRVQDRVMAEPARD
WSLERLADIAALSERHLSRLFREHTGISVIDYVNLMRVNLARDILSNSRLDMEAIAERAGFASARHLRRVWQQHNRYPPS
HYRGFQA

Specific function: Unknown

COG id: COG4977

COG function: function code K; Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR002818 [H]

Pfam domain/function: PF01965 DJ-1_PfpI; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 36504; Mature: 36504

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDKGGTRVIPFYTLVPPHALLLDIAGPLQVIRYANNEQNDVFFDCRYIAAQEKQQSSIGL
CCCCCCEEEEEEEECCCHHHHHHHCCHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCE
GICGLETLPATLPENAFLLISGSTSRSESEPETRRERQALAAWLRRVVGLDTTVISICSG
EEECHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
ALLAGEAGLFDGRSCTTHSDCIETLRRVAPLSQVAENRLFVEDGNRFSSAGISTGIDLML
HHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEECCCCHHHCCHHHHHHHHH
HVVSRLTSLAVAARIAQTMVVYLRRNGNDPQISPWLTGRNHMHPAIHRVQDRVMAEPARD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC
WSLERLADIAALSERHLSRLFREHTGISVIDYVNLMRVNLARDILSNSRLDMEAIAERAG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
FASARHLRRVWQQHNRYPPSHYRGFQA
HHHHHHHHHHHHHHCCCCCHHCCCCCC
>Mature Secondary Structure
MDKGGTRVIPFYTLVPPHALLLDIAGPLQVIRYANNEQNDVFFDCRYIAAQEKQQSSIGL
CCCCCCEEEEEEEECCCHHHHHHHCCHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHCCCE
GICGLETLPATLPENAFLLISGSTSRSESEPETRRERQALAAWLRRVVGLDTTVISICSG
EEECHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHCC
ALLAGEAGLFDGRSCTTHSDCIETLRRVAPLSQVAENRLFVEDGNRFSSAGISTGIDLML
HHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHHCCEEEECCCCHHHCCHHHHHHHHH
HVVSRLTSLAVAARIAQTMVVYLRRNGNDPQISPWLTGRNHMHPAIHRVQDRVMAEPARD
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHHHCCCCC
WSLERLADIAALSERHLSRLFREHTGISVIDYVNLMRVNLARDILSNSRLDMEAIAERAG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHC
FASARHLRRVWQQHNRYPPSHYRGFQA
HHHHHHHHHHHHHHCCCCCHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430 [H]