| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is phnK [H]
Identifier: 159184199
GI number: 159184199
Start: 180949
End: 181725
Strand: Reverse
Name: phnK [H]
Synonym: Atu0177
Alternate gene names: 159184199
Gene position: 181725-180949 (Counterclockwise)
Preceding gene: 15887532
Following gene: 159184198
Centisome position: 6.4
GC content: 62.03
Gene sequence:
>777_bases ATGAGCGACGCACCGCTTCTGAAAGTCCGGGACGTTTCCAAATATTACGGCGACCGCGCCGGTTGCCGCAACGTCTCCTT CGAGCTTTATCCGGGCGAGGTGCTGGCGATCGTCGGTGAATCCGGTTCCGGCAAAACCACGTTGCTCAACTGCATTTCCA CCCGGCTGATGCCAACGGCGGGCAGCGTGGAATATCGCATGCGCGATGGCTCGGTGCGCGACCTCTATCATATGGGTGAG GCCGAACGGCGTTTTCTGATGCGCACCGACTGGGGTTTCGTACACCAGAACCCGGCGGATGGACTGCGCATGGCGGTGTC TGCCGGCGCCAATGTCGGCGAGCGGCTGATGGCCGTGGGTAACCGGCATTACGGTAATATCAGGCAATCGGCGAGCGAAT GGCTGGAGCGGGTGGAAATCGGCACCGACCGTATCGACGACCAGCCGCGCGCCTTTTCCGGCGGCATGCGCCAGCGCCTG CAGATTGCCCGCAACCTCGTCACCTCGCCGCGCCTTGTCTTCATGGATGAACCGACCGGCGGCCTCGATGTTTCGGTGCA GGCACGCCTGCTCGATCTCGTGCGCGGTCTCGTCAACGATCTCGGCCTTGCGGTCGTCGTCGTCACCCATGATCTCGCGG TTGCGCGGCTGTTATCCCATCGCATGATGGTGATGAAGGGCGGCGACGTCATCGAACATGGCCTCACCGACCGGGTGCTG GATGATCCGCGTGAGCCCTACACGCAATTGCTTGTTTCCTCCATTTTGCAGGTCTAG
Upstream 100 bases:
>100_bases GCGGGCGCATGTTCGTCTGCTCCGATACCGACCATTGCGAAGACCGCCGTGCTCATGGCCACAAGGGCCATCTGCTGGCG GATGTGAAGGAGGCCGCAGA
Downstream 100 bases:
>100_bases CCGCGTCGTTCCGAAAAGTGGTCCCCGGTTTTCGGATAAAATCACGCGCAGGAAGAAAGAACCCACCATGACGACGCCCC TTATCGTTTCAGAAGTCTTC
Product: phosphonate C-P lyase system protein PhnK
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 258; Mature: 257
Protein sequence:
>258_residues MSDAPLLKVRDVSKYYGDRAGCRNVSFELYPGEVLAIVGESGSGKTTLLNCISTRLMPTAGSVEYRMRDGSVRDLYHMGE AERRFLMRTDWGFVHQNPADGLRMAVSAGANVGERLMAVGNRHYGNIRQSASEWLERVEIGTDRIDDQPRAFSGGMRQRL QIARNLVTSPRLVFMDEPTGGLDVSVQARLLDLVRGLVNDLGLAVVVVTHDLAVARLLSHRMMVMKGGDVIEHGLTDRVL DDPREPYTQLLVSSILQV
Sequences:
>Translated_258_residues MSDAPLLKVRDVSKYYGDRAGCRNVSFELYPGEVLAIVGESGSGKTTLLNCISTRLMPTAGSVEYRMRDGSVRDLYHMGE AERRFLMRTDWGFVHQNPADGLRMAVSAGANVGERLMAVGNRHYGNIRQSASEWLERVEIGTDRIDDQPRAFSGGMRQRL QIARNLVTSPRLVFMDEPTGGLDVSVQARLLDLVRGLVNDLGLAVVVVTHDLAVARLLSHRMMVMKGGDVIEHGLTDRVL DDPREPYTQLLVSSILQV >Mature_257_residues SDAPLLKVRDVSKYYGDRAGCRNVSFELYPGEVLAIVGESGSGKTTLLNCISTRLMPTAGSVEYRMRDGSVRDLYHMGEA ERRFLMRTDWGFVHQNPADGLRMAVSAGANVGERLMAVGNRHYGNIRQSASEWLERVEIGTDRIDDQPRAFSGGMRQRLQ IARNLVTSPRLVFMDEPTGGLDVSVQARLLDLVRGLVNDLGLAVVVVTHDLAVARLLSHRMMVMKGGDVIEHGLTDRVLD DPREPYTQLLVSSILQV
Specific function: Part of the binding-protein-dependent transport system for alkylphosphonates. Probably responsible for energy coupling to the transport system [H]
COG id: COG4107
COG function: function code P; ABC-type phosphonate transport system, ATPase component
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI6005701, Length=225, Percent_Identity=25.7777777777778, Blast_Score=72, Evalue=4e-13, Organism=Homo sapiens, GI45446740, Length=224, Percent_Identity=26.3392857142857, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI47078218, Length=224, Percent_Identity=26.3392857142857, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI27436953, Length=227, Percent_Identity=24.6696035242291, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI171184400, Length=240, Percent_Identity=25, Blast_Score=67, Evalue=2e-11, Organism=Escherichia coli, GI48994997, Length=255, Percent_Identity=67.4509803921569, Blast_Score=344, Evalue=4e-96, Organism=Escherichia coli, GI1789962, Length=260, Percent_Identity=36.9230769230769, Blast_Score=155, Evalue=3e-39, Organism=Escherichia coli, GI1789963, Length=256, Percent_Identity=33.59375, Blast_Score=137, Evalue=5e-34, Organism=Escherichia coli, GI145693107, Length=246, Percent_Identity=32.1138211382114, Blast_Score=133, Evalue=9e-33, Organism=Escherichia coli, GI1787500, Length=232, Percent_Identity=34.051724137931, Blast_Score=132, Evalue=2e-32, Organism=Escherichia coli, GI1788506, Length=247, Percent_Identity=36.0323886639676, Blast_Score=130, Evalue=8e-32, Organism=Escherichia coli, GI1787758, Length=266, Percent_Identity=33.8345864661654, Blast_Score=127, Evalue=5e-31, Organism=Escherichia coli, GI48994883, Length=259, Percent_Identity=31.2741312741313, Blast_Score=118, Evalue=3e-28, Organism=Escherichia coli, GI1787759, Length=242, Percent_Identity=34.297520661157, Blast_Score=117, Evalue=7e-28, Organism=Escherichia coli, GI1788225, Length=253, Percent_Identity=31.6205533596838, Blast_Score=113, Evalue=1e-26, Organism=Escherichia coli, GI1786398, Length=257, Percent_Identity=28.7937743190661, Blast_Score=111, Evalue=4e-26, Organism=Escherichia coli, GI87081791, Length=259, Percent_Identity=29.3436293436293, Blast_Score=108, Evalue=3e-25, Organism=Escherichia coli, GI87081834, Length=206, Percent_Identity=38.3495145631068, Blast_Score=105, Evalue=3e-24, Organism=Escherichia coli, GI1789672, Length=253, Percent_Identity=27.6679841897233, Blast_Score=103, Evalue=9e-24, Organism=Escherichia coli, GI1789864, Length=251, Percent_Identity=26.2948207171315, Blast_Score=101, Evalue=5e-23, Organism=Escherichia coli, GI1787029, Length=239, Percent_Identity=30.1255230125523, Blast_Score=100, Evalue=7e-23, Organism=Escherichia coli, GI1789891, Length=241, Percent_Identity=30.2904564315353, Blast_Score=100, Evalue=8e-23, Organism=Escherichia coli, GI1787547, Length=259, Percent_Identity=28.957528957529, Blast_Score=99, Evalue=2e-22, Organism=Escherichia coli, GI1788761, Length=255, Percent_Identity=29.4117647058824, Blast_Score=99, Evalue=3e-22, Organism=Escherichia coli, GI1787370, Length=261, Percent_Identity=27.5862068965517, Blast_Score=96, Evalue=3e-21, Organism=Escherichia coli, GI1789873, Length=230, Percent_Identity=32.6086956521739, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1789032, Length=229, Percent_Identity=29.2576419213974, Blast_Score=95, Evalue=4e-21, Organism=Escherichia coli, GI1787548, Length=262, Percent_Identity=27.4809160305344, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1787712, Length=237, Percent_Identity=30.379746835443, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI1788644, Length=259, Percent_Identity=30.1158301158301, Blast_Score=92, Evalue=2e-20, Organism=Escherichia coli, GI1787089, Length=237, Percent_Identity=27.0042194092827, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI1787105, Length=242, Percent_Identity=31.404958677686, Blast_Score=92, Evalue=4e-20, Organism=Escherichia coli, GI87081709, Length=255, Percent_Identity=28.2352941176471, Blast_Score=91, Evalue=6e-20, Organism=Escherichia coli, GI1786872, Length=252, Percent_Identity=30.1587301587302, Blast_Score=91, Evalue=7e-20, Organism=Escherichia coli, GI1790162, Length=250, Percent_Identity=28, Blast_Score=90, Evalue=2e-19, Organism=Escherichia coli, GI1790467, Length=231, Percent_Identity=28.1385281385281, Blast_Score=89, Evalue=2e-19, Organism=Escherichia coli, GI1787164, Length=241, Percent_Identity=30.2904564315353, Blast_Score=89, Evalue=3e-19, Organism=Escherichia coli, GI1786319, Length=235, Percent_Identity=26.3829787234043, Blast_Score=88, Evalue=7e-19, Organism=Escherichia coli, GI1790525, Length=243, Percent_Identity=26.7489711934156, Blast_Score=87, Evalue=2e-18, Organism=Escherichia coli, GI1789890, Length=233, Percent_Identity=30.4721030042918, Blast_Score=86, Evalue=3e-18, Organism=Escherichia coli, GI1786563, Length=232, Percent_Identity=30.6034482758621, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI1786703, Length=184, Percent_Identity=34.7826086956522, Blast_Score=82, Evalue=5e-17, Organism=Escherichia coli, GI1790190, Length=221, Percent_Identity=26.2443438914027, Blast_Score=80, Evalue=2e-16, Organism=Escherichia coli, GI1788450, Length=248, Percent_Identity=25, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786803, Length=247, Percent_Identity=28.7449392712551, Blast_Score=78, Evalue=5e-16, Organism=Escherichia coli, GI1786345, Length=241, Percent_Identity=25.3112033195021, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1786253, Length=239, Percent_Identity=29.2887029288703, Blast_Score=77, Evalue=9e-16, Organism=Escherichia coli, GI1787792, Length=224, Percent_Identity=29.0178571428571, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI1789991, Length=226, Percent_Identity=28.7610619469027, Blast_Score=77, Evalue=1e-15, Organism=Escherichia coli, GI87082267, Length=249, Percent_Identity=26.9076305220884, Blast_Score=76, Evalue=2e-15, Organism=Escherichia coli, GI48995001, Length=226, Percent_Identity=25.6637168141593, Blast_Score=75, Evalue=6e-15, Organism=Escherichia coli, GI1789593, Length=243, Percent_Identity=26.7489711934156, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI1790534, Length=229, Percent_Identity=29.2576419213974, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI87082268, Length=237, Percent_Identity=26.1603375527426, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788210, Length=231, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI87081782, Length=235, Percent_Identity=24.6808510638298, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1790544, Length=253, Percent_Identity=24.901185770751, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1788897, Length=230, Percent_Identity=27.3913043478261, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788472, Length=233, Percent_Identity=23.175965665236, Blast_Score=62, Evalue=3e-11, Organism=Caenorhabditis elegans, GI115533608, Length=243, Percent_Identity=28.3950617283951, Blast_Score=89, Evalue=2e-18, Organism=Caenorhabditis elegans, GI193202349, Length=222, Percent_Identity=28.8288288288288, Blast_Score=79, Evalue=3e-15, Organism=Caenorhabditis elegans, GI17565938, Length=234, Percent_Identity=26.0683760683761, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI71984940, Length=240, Percent_Identity=28.3333333333333, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI193208177, Length=257, Percent_Identity=26.4591439688716, Blast_Score=75, Evalue=4e-14, Organism=Caenorhabditis elegans, GI17543740, Length=233, Percent_Identity=24.8927038626609, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI25146777, Length=231, Percent_Identity=27.2727272727273, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI212646699, Length=219, Percent_Identity=26.027397260274, Blast_Score=68, Evalue=4e-12, Organism=Caenorhabditis elegans, GI115534520, Length=228, Percent_Identity=26.3157894736842, Blast_Score=67, Evalue=8e-12, Organism=Caenorhabditis elegans, GI17552010, Length=226, Percent_Identity=26.1061946902655, Blast_Score=67, Evalue=9e-12, Organism=Caenorhabditis elegans, GI17558664, Length=217, Percent_Identity=24.8847926267281, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI24643674, Length=224, Percent_Identity=24.5535714285714, Blast_Score=77, Evalue=1e-14, Organism=Drosophila melanogaster, GI24641565, Length=244, Percent_Identity=26.6393442622951, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI281363262, Length=222, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=3e-13, Organism=Drosophila melanogaster, GI24653245, Length=222, Percent_Identity=27.027027027027, Blast_Score=72, Evalue=4e-13, Organism=Drosophila melanogaster, GI221512771, Length=228, Percent_Identity=25, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI28574150, Length=225, Percent_Identity=25.3333333333333, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI116007328, Length=225, Percent_Identity=25.3333333333333, Blast_Score=72, Evalue=5e-13, Organism=Drosophila melanogaster, GI161076682, Length=214, Percent_Identity=28.9719626168224, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI161076684, Length=214, Percent_Identity=28.9719626168224, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24581617, Length=214, Percent_Identity=28.9719626168224, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI24581615, Length=214, Percent_Identity=28.9719626168224, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI23397593, Length=241, Percent_Identity=28.2157676348548, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI85726357, Length=244, Percent_Identity=23.3606557377049, Blast_Score=65, Evalue=4e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 - InterPro: IPR012700 - InterPro: IPR013563 [H]
Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]
EC number: NA
Molecular weight: Translated: 28582; Mature: 28451
Theoretical pI: Translated: 7.15; Mature: 7.15
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.4 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSDAPLLKVRDVSKYYGDRAGCRNVSFELYPGEVLAIVGESGSGKTTLLNCISTRLMPTA CCCCCEEEHHHHHHHHCCCCCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCC GSVEYRMRDGSVRDLYHMGEAERRFLMRTDWGFVHQNPADGLRMAVSAGANVGERLMAVG CCEEEEECCCCHHHHHHCCHHHHHEEHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC NRHYGNIRQSASEWLERVEIGTDRIDDQPRAFSGGMRQRLQIARNLVTSPRLVFMDEPTG CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC GLDVSVQARLLDLVRGLVNDLGLAVVVVTHDLAVARLLSHRMMVMKGGDVIEHGLTDRVL CCCHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHEEECCHHHHHCCHHHHH DDPREPYTQLLVSSILQV CCCCCHHHHHHHHHHHCC >Mature Secondary Structure SDAPLLKVRDVSKYYGDRAGCRNVSFELYPGEVLAIVGESGSGKTTLLNCISTRLMPTA CCCCEEEHHHHHHHHCCCCCCCCCEEEECCCEEEEEEECCCCCHHHHHHHHHHHHCCCC GSVEYRMRDGSVRDLYHMGEAERRFLMRTDWGFVHQNPADGLRMAVSAGANVGERLMAVG CCEEEEECCCCHHHHHHCCHHHHHEEHCCCCCCCCCCCCHHHHHHHHCCCCHHHHHHHHC NRHYGNIRQSASEWLERVEIGTDRIDDQPRAFSGGMRQRLQIARNLVTSPRLVFMDEPTG CCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCCC GLDVSVQARLLDLVRGLVNDLGLAVVVVTHDLAVARLLSHRMMVMKGGDVIEHGLTDRVL CCCHHHHHHHHHHHHHHHHHHCEEEEEHHHHHHHHHHHHHHHHEEECCHHHHHCCHHHHH DDPREPYTQLLVSSILQV CCCCCHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2155230; 1840580; 7610040; 9278503 [H]