Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 159184189
Identifier: 159184189
GI number: 159184189
Start: 162149
End: 162859
Strand: Reverse
Name: 159184189
Synonym: Atu0156
Alternate gene names: NA
Gene position: 162859-162149 (Counterclockwise)
Preceding gene: 159184192
Following gene: 159184188
Centisome position: 5.73
GC content: 60.62
Gene sequence:
>711_bases ATGACCAGACAGAGACGCCGTAACATCATCAGGGCAAGGCGCACCGGCACCGGTATTGCGCTTGTCGCCGCCATTTCATT CATCGCCGGAATGACGGATGCGGTGGGTCTTCATCTGTCCGGCGATTTCGTTTCCTTCATGACTGGCAACACCACCCGTG CGGCCATCTCACTGGAAGCGGGCGTTTATTCCCATGCCGCGAAACTGCTTTTCGCGATCGTCGCTTTTGTGGCGGGCAAT GCCGGGGGCATCGTGGTTGCGCATAAATTCGACCGGAGCATCCTTGCCGTTCTTGTGGGCGTGGGGTTGCTGGTGGCGAT TGCCGCCTTGCTGCGCGGCGACGCTTTCGCCCTGACACAGTTTTATCTTGTGGTTTTCGCCATGGGCATGGTCAACGCGG CCGTTGAGCATATTGAGGGCCTGCCAATCGGCCTCACTTATGTTACCGGCGCCCTTTCCCGTTTCGGGCGTGGCATCGGC CGCTTTCTTCTGGGGGAGCGAAGTCTCGATTGGGGCATTCAGATCGTGCCCTGGCTCGGCATGATCAGCGGGGCAATCTG CGGGGCCGTATTGGGCGTCACGCTACAGTCCGGCGCCCTGTGGGTGGTTGCGGCAACCGTTTTTGCGGTCGCCGTCGCCA CCTTGGTCATTCCGCGTTCGCTGCGCCACCGCTATAATCAAAGGGTCCGGATCAGGCGCATCGCGCCTTGA
Upstream 100 bases:
>100_bases AACGCTTCCAGAAAGATTGCAAACGGACCGCCCGGCATTCTAGACATAGGATAACACAGCCAGGCGCATCGGCCCGCTGT TTTCTATATCGAGTCTTTCC
Downstream 100 bases:
>100_bases CGGACCGCACCGTCACTTTCGCGAAATCGTCACGAATTTCGTGCCGCGGACCCGCACCGTCATCAGGCAGGGTTCCTTAT CGGTGCGCTCGCAATAACGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 236; Mature: 235
Protein sequence:
>236_residues MTRQRRRNIIRARRTGTGIALVAAISFIAGMTDAVGLHLSGDFVSFMTGNTTRAAISLEAGVYSHAAKLLFAIVAFVAGN AGGIVVAHKFDRSILAVLVGVGLLVAIAALLRGDAFALTQFYLVVFAMGMVNAAVEHIEGLPIGLTYVTGALSRFGRGIG RFLLGERSLDWGIQIVPWLGMISGAICGAVLGVTLQSGALWVVAATVFAVAVATLVIPRSLRHRYNQRVRIRRIAP
Sequences:
>Translated_236_residues MTRQRRRNIIRARRTGTGIALVAAISFIAGMTDAVGLHLSGDFVSFMTGNTTRAAISLEAGVYSHAAKLLFAIVAFVAGN AGGIVVAHKFDRSILAVLVGVGLLVAIAALLRGDAFALTQFYLVVFAMGMVNAAVEHIEGLPIGLTYVTGALSRFGRGIG RFLLGERSLDWGIQIVPWLGMISGAICGAVLGVTLQSGALWVVAATVFAVAVATLVIPRSLRHRYNQRVRIRRIAP >Mature_235_residues TRQRRRNIIRARRTGTGIALVAAISFIAGMTDAVGLHLSGDFVSFMTGNTTRAAISLEAGVYSHAAKLLFAIVAFVAGNA GGIVVAHKFDRSILAVLVGVGLLVAIAALLRGDAFALTQFYLVVFAMGMVNAAVEHIEGLPIGLTYVTGALSRFGRGIGR FLLGERSLDWGIQIVPWLGMISGAICGAVLGVTLQSGALWVVAATVFAVAVATLVIPRSLRHRYNQRVRIRRIAP
Specific function: Unknown
COG id: COG3619
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0700 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010699 [H]
Pfam domain/function: PF06912 DUF1275 [H]
EC number: NA
Molecular weight: Translated: 24982; Mature: 24851
Theoretical pI: Translated: 12.12; Mature: 12.12
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRQRRRNIIRARRTGTGIALVAAISFIAGMTDAVGLHLSGDFVSFMTGNTTRAAISLEA CCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHEEEECCCCHHHHCCCCCEEEEEEHH GVYSHAAKLLFAIVAFVAGNAGGIVVAHKFDRSILAVLVGVGLLVAIAALLRGDAFALTQ HHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FYLVVFAMGMVNAAVEHIEGLPIGLTYVTGALSRFGRGIGRFLLGERSLDWGIQIVPWLG HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH MISGAICGAVLGVTLQSGALWVVAATVFAVAVATLVIPRSLRHRYNQRVRIRRIAP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC >Mature Secondary Structure TRQRRRNIIRARRTGTGIALVAAISFIAGMTDAVGLHLSGDFVSFMTGNTTRAAISLEA CHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHEEEECCCCHHHHCCCCCEEEEEEHH GVYSHAAKLLFAIVAFVAGNAGGIVVAHKFDRSILAVLVGVGLLVAIAALLRGDAFALTQ HHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHH FYLVVFAMGMVNAAVEHIEGLPIGLTYVTGALSRFGRGIGRFLLGERSLDWGIQIVPWLG HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHH MISGAICGAVLGVTLQSGALWVVAATVFAVAVATLVIPRSLRHRYNQRVRIRRIAP HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9659380; 11481432 [H]