Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is slyA [C]
Identifier: 159184161
GI number: 159184161
Start: 112000
End: 112446
Strand: Reverse
Name: slyA [C]
Synonym: Atu0109
Alternate gene names: 159184161
Gene position: 112446-112000 (Counterclockwise)
Preceding gene: 15887464
Following gene: 159184160
Centisome position: 3.96
GC content: 56.15
Gene sequence:
>447_bases ATGGACGGAAGAATGGGTTTTTCCCGGGATGAATCGGCAATCTATCTCGCCGCGAAGATGGCGCGGGAATTTACCATGGC GCTGCAGAAAAGAGCCGCTGCGCTCGGTTTTTCTCCCGGCCAATTTCCCATCCTCATCGAGCTCTGGCATGAAGAAGGCC TGACCCAGCGGCAATTGCTTGATCGAATCGATGTCGAACAGGCAACGCTTGCCAACACGCTGTCTCGCATGGAACGTGAC GGGCTGATTGTCCGCAAATCCCATCCGAGCGATCGCCGCGCCCAGATCATCGAACTGACCCAGCGTGGCAGGGATCTGGA GGCGAATGCCATCGCCGCTTCCGAGGCCACCGAAGACACATTGCTTGCGAATTTCCGCCGCTTCGAGCGACAGCTTTTGC TGGAATATATGCGCCGGGCGATCGAAAGCGCAAAAAAAGCAAAATAA
Upstream 100 bases:
>100_bases TGGCGGTTTTATTTTGCCCCCTGTTTGGGCTAGTCTAAACATATCATGCGATATATACCACGCTATTAAAGTTACCGGCT TTCCGCTGGTGGCGACGTGC
Downstream 100 bases:
>100_bases CGTCTACGGTCCAAAACCGCTTCGCAGTTTTCGTGAACTGCTCTATCGTTCCGGCGGCCACGCGCTTGCCGATTCACGAC AAGCCCGCGCCTTGTTTCCC
Product: MarR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator MarR Family; Transcriptional Regulator; Transcriptional Regulator Protein; Transcriptional Regulator MarR Family Protein; HTH-Type Transcriptional Regulator; Transcriptional Regulator TrmB; Regulatory Protein MarR; Transcriptional Regulator PecS; Transcriptional Regulator Marr Family; MarR Family Transcriptional Regulator Protein
Number of amino acids: Translated: 148; Mature: 148
Protein sequence:
>148_residues MDGRMGFSRDESAIYLAAKMAREFTMALQKRAAALGFSPGQFPILIELWHEEGLTQRQLLDRIDVEQATLANTLSRMERD GLIVRKSHPSDRRAQIIELTQRGRDLEANAIAASEATEDTLLANFRRFERQLLLEYMRRAIESAKKAK
Sequences:
>Translated_148_residues MDGRMGFSRDESAIYLAAKMAREFTMALQKRAAALGFSPGQFPILIELWHEEGLTQRQLLDRIDVEQATLANTLSRMERD GLIVRKSHPSDRRAQIIELTQRGRDLEANAIAASEATEDTLLANFRRFERQLLLEYMRRAIESAKKAK >Mature_148_residues MDGRMGFSRDESAIYLAAKMAREFTMALQKRAAALGFSPGQFPILIELWHEEGLTQRQLLDRIDVEQATLANTLSRMERD GLIVRKSHPSDRRAQIIELTQRGRDLEANAIAASEATEDTLLANFRRFERQLLLEYMRRAIESAKKAK
Specific function: Transcription Factor That Activates Expression Of Genes Such As Molecular Chaperones (Grol, Gros, Dnak, Grpe, And Cbpa), Proteins Involved In Acid Resistance (Hdea, Hdeb, And Gada), The Starvation Lipoprotein Slp, Virulence Protein Hlye/Clya. Represses Ex
COG id: COG1846
COG function: function code K; Transcriptional regulators
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 16922; Mature: 16922
Theoretical pI: Translated: 9.72; Mature: 9.72
Prosite motif: PS01117 HTH_MARR_1 ; PS50995 HTH_MARR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDGRMGFSRDESAIYLAAKMAREFTMALQKRAAALGFSPGQFPILIELWHEEGLTQRQLL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCHHHHHH DRIDVEQATLANTLSRMERDGLIVRKSHPSDRRAQIIELTQRGRDLEANAIAASEATEDT HHHCHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH LLANFRRFERQLLLEYMRRAIESAKKAK HHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDGRMGFSRDESAIYLAAKMAREFTMALQKRAAALGFSPGQFPILIELWHEEGLTQRQLL CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEHHHCCCHHHHHH DRIDVEQATLANTLSRMERDGLIVRKSHPSDRRAQIIELTQRGRDLEANAIAASEATEDT HHHCHHHHHHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHCCHHHHHH LLANFRRFERQLLLEYMRRAIESAKKAK HHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: DNA [C]
Specific reaction: Protein + DNA = Protein-DNA [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA