Definition Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence.
Accession NC_009957
Length 126,304

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The map label for this gene is 159046566

Identifier: 159046566

GI number: 159046566

Start: 94398

End: 95282

Strand: Direct

Name: 159046566

Synonym: Dshi_4028

Alternate gene names: NA

Gene position: 94398-95282 (Clockwise)

Preceding gene: 159046563

Following gene: 159046567

Centisome position: 74.74

GC content: 67.34

Gene sequence:

>885_bases
ATGACTTTTACCCGGCCAGATCATATCAGCGACCGCGACACGTTACCCCGGATGCCCGCCTGGGTCACCTCTGCACGCGC
TGAAACCCTTGAAGATGTTGCGTTTTTGTCGGGTGCCGCACTGAGCCAACTGCATCTAGTGTTGGGATACAAGGAGGTGC
CCCAACCCTTGTTGCGGGATCGGCTGGTGCTGCGTGCGGCTGAGGCTTGTGTCGCGTTTTCGGGGCGCCCGGAGCGGGTA
GGGGAGCTGCGCGACGCCGTATACCTTCTGCGCCCCGGCGATCTGCCCGGGCCGGCCGGTGAAACTTATCTTGCTTGGCA
GCGCGCGGCGGAGCGACCGGTGTCGATCAAGGTTCTCGATCGGGCCTTGCCGACCATCGAGCCGGGCCAGATTGCGACAT
GGCTCGATGCTGGGAAAGGCGCGCCAGTGACCCGGGCTGTGATGGTGCTCGAGGCGGTGCTGCGCGAGGCGCCGCGCGAA
GACCTCGCAGCGCTGATCCTCGCGGATGCCGCCCTCGCTCTGGCAATCGGCTGGGATCATCTCGTGCCGATGCTGGCCCC
AGGCCTGAAACGCGCCGACCTGCGCAAGCAAGGCGGCGACTTGCGTCTGGCCTGTCATCGCGCACTCATCTCTTCGGTGA
TCGAGGCCGTTCGGCAGGCCGCGGACCTCGCGCGTCGGGCGGCGCAACTCAAGGCAGTCGCACCCAAGCTTCGGGCAAAA
GGGGCGGGCGATGCGGTCGAGATGTTCCTGACCCGCGATGCAGTGGCGCCCTCGGCGCTACCCCTGCCGGATCGCGCCGC
GCGGCGGCTCTGCGACCGGCTGGTCGACCTCGGTGCGGTGCGCGAGCTGACCGGGCGCGACACTTTCCGGCTCTACGGGG
TGTAG

Upstream 100 bases:

>100_bases
CGATAATGCAAACTTATTGGACATAGCGGAGAGCGGCAAGTCGGGGCGGTTAGATCGCTATTTTCTGGCAGAAAGCGCCG
CGATGGTGTAGGCTTCAGAC

Downstream 100 bases:

>100_bases
CGATGGCGAAGGATCGCTCAGACCCCGAACTGGATCGCGAGTTGCCCGATCTGCCGCCTGAGCTGCGCTGGCGGGAATGG
ATACGCCGGATCGAGGCTGT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MTFTRPDHISDRDTLPRMPAWVTSARAETLEDVAFLSGAALSQLHLVLGYKEVPQPLLRDRLVLRAAEACVAFSGRPERV
GELRDAVYLLRPGDLPGPAGETYLAWQRAAERPVSIKVLDRALPTIEPGQIATWLDAGKGAPVTRAVMVLEAVLREAPRE
DLAALILADAALALAIGWDHLVPMLAPGLKRADLRKQGGDLRLACHRALISSVIEAVRQAADLARRAAQLKAVAPKLRAK
GAGDAVEMFLTRDAVAPSALPLPDRAARRLCDRLVDLGAVRELTGRDTFRLYGV

Sequences:

>Translated_294_residues
MTFTRPDHISDRDTLPRMPAWVTSARAETLEDVAFLSGAALSQLHLVLGYKEVPQPLLRDRLVLRAAEACVAFSGRPERV
GELRDAVYLLRPGDLPGPAGETYLAWQRAAERPVSIKVLDRALPTIEPGQIATWLDAGKGAPVTRAVMVLEAVLREAPRE
DLAALILADAALALAIGWDHLVPMLAPGLKRADLRKQGGDLRLACHRALISSVIEAVRQAADLARRAAQLKAVAPKLRAK
GAGDAVEMFLTRDAVAPSALPLPDRAARRLCDRLVDLGAVRELTGRDTFRLYGV
>Mature_293_residues
TFTRPDHISDRDTLPRMPAWVTSARAETLEDVAFLSGAALSQLHLVLGYKEVPQPLLRDRLVLRAAEACVAFSGRPERVG
ELRDAVYLLRPGDLPGPAGETYLAWQRAAERPVSIKVLDRALPTIEPGQIATWLDAGKGAPVTRAVMVLEAVLREAPRED
LAALILADAALALAIGWDHLVPMLAPGLKRADLRKQGGDLRLACHRALISSVIEAVRQAADLARRAAQLKAVAPKLRAKG
AGDAVEMFLTRDAVAPSALPLPDRAARRLCDRLVDLGAVRELTGRDTFRLYGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31837; Mature: 31706

Theoretical pI: Translated: 9.55; Mature: 9.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFTRPDHISDRDTLPRMPAWVTSARAETLEDVAFLSGAALSQLHLVLGYKEVPQPLLRD
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHH
RLVLRAAEACVAFSGRPERVGELRDAVYLLRPGDLPGPAGETYLAWQRAAERPVSIKVLD
HHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
RALPTIEPGQIATWLDAGKGAPVTRAVMVLEAVLREAPREDLAALILADAALALAIGWDH
HHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LVPMLAPGLKRADLRKQGGDLRLACHRALISSVIEAVRQAADLARRAAQLKAVAPKLRAK
HHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GAGDAVEMFLTRDAVAPSALPLPDRAARRLCDRLVDLGAVRELTGRDTFRLYGV
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC
>Mature Secondary Structure 
TFTRPDHISDRDTLPRMPAWVTSARAETLEDVAFLSGAALSQLHLVLGYKEVPQPLLRD
CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHH
RLVLRAAEACVAFSGRPERVGELRDAVYLLRPGDLPGPAGETYLAWQRAAERPVSIKVLD
HHHHHHHHHHHHCCCCHHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHHCCCCCHHHHH
RALPTIEPGQIATWLDAGKGAPVTRAVMVLEAVLREAPREDLAALILADAALALAIGWDH
HHCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
LVPMLAPGLKRADLRKQGGDLRLACHRALISSVIEAVRQAADLARRAAQLKAVAPKLRAK
HHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
GAGDAVEMFLTRDAVAPSALPLPDRAARRLCDRLVDLGAVRELTGRDTFRLYGV
CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA