Definition Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence.
Accession NC_009957
Length 126,304

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The map label for this gene is 159046533

Identifier: 159046533

GI number: 159046533

Start: 57594

End: 58274

Strand: Direct

Name: 159046533

Synonym: Dshi_3995

Alternate gene names: NA

Gene position: 57594-58274 (Clockwise)

Preceding gene: 159046524

Following gene: 159046534

Centisome position: 45.6

GC content: 63.29

Gene sequence:

>681_bases
ATGTGCAATCTCTACTCCCAGACCAAAAGCCAGGACGCGATGCGCCACCTGTTTAACGACATGCTCGGGGAGAATGAGGA
ACTTGTAGACAGCACCGGGAACCTGCCGCCTCAACCTGGTATCTGGCCCGATTATCCGGCACCGATCATTCGACATGGTG
AAAGCGCAGCGTGGCAGCTGGCCATGGCCCGTTGGGGCATGCCGACCCCTGCGAAGTTTCTCGAAGGCAAGCGCACCGAC
AAGGGTGTCACCAATATCCGCAATGTCGGCTCTCCCCATTGGCGGCGCTGGCTCGGTGTCGAACATCGTTGCCTCGTGCC
CTTCACCAGTTTTTCGGAAATCGACGGGCGCCGGGGTGCGCCGCGCAATTCGCCGGTCTGGTTCGCTTTGGACGAGGATC
GGCCGCTCGCCTTCTTCGCCGGGCTGCGGACGGAATGGACCTCGGTGCGCAAGCTGAAGGAAGGCGAGGTGACAGCGGAG
ATCTTCGGTTTCCTGACCTGCCCGCCCAATGCCGAAGTTGCGCCGATCCACCCCAAAGCCATGCCCGTCATCCTCACGCA
GCCCGAGGAATGGCGGCACTGGCTGACCGCGCCGGCCGAGGAGGCCCTGAAGCTCCAGCGTCCCCTCCCGGACGGGAGGC
TGAAGATCGTTGCCGAGGGGGTGCGCGAGGATGCGGTTTGA

Upstream 100 bases:

>100_bases
CAAAACTGCATCGTTGAGAAAAAGTCACACTTTTCAGACGATCTGTGTTCTGCCATTGTTCTCGATTAAATCCCCATTTC
GATTCCCAAGCGTACGACAG

Downstream 100 bases:

>100_bases
TCCGGCTCCGAGCGAACTCTTTGCCCTGGCCCGGCACCGGGTCCATGAGGCCGAAGGTCCAGGCCGGCGCAGCTTCGCAT
TGCTGCAGGCCGCCCGACAT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQLAMARWGMPTPAKFLEGKRTD
KGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGAPRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAE
IFGFLTCPPNAEVAPIHPKAMPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV

Sequences:

>Translated_226_residues
MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQLAMARWGMPTPAKFLEGKRTD
KGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGAPRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAE
IFGFLTCPPNAEVAPIHPKAMPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV
>Mature_226_residues
MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQLAMARWGMPTPAKFLEGKRTD
KGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGAPRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAE
IFGFLTCPPNAEVAPIHPKAMPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV

Specific function: Unknown

COG id: COG2135

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25553; Mature: 25553

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQL
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHH
AMARWGMPTPAKFLEGKRTDKGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGA
HHHHCCCCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHCCCCCCC
PRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAEIFGFLTCPPNAEVAPIHPKA
CCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCEEEEHEEEEECCCCCCEECCCCCC
MPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV
EEEEEECCHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEHHHHHCCC
>Mature Secondary Structure
MCNLYSQTKSQDAMRHLFNDMLGENEELVDSTGNLPPQPGIWPDYPAPIIRHGESAAWQL
CCCCCCHHHHHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCHHHHCCCHHHHHH
AMARWGMPTPAKFLEGKRTDKGVTNIRNVGSPHWRRWLGVEHRCLVPFTSFSEIDGRRGA
HHHHCCCCCCHHHHCCCCCCCHHHHHHHCCCHHHHHHHCCCCEEEECCCCHHHCCCCCCC
PRNSPVWFALDEDRPLAFFAGLRTEWTSVRKLKEGEVTAEIFGFLTCPPNAEVAPIHPKA
CCCCCEEEEECCCCCEEEECCCHHHHHHHHHHHCCCEEEEHEEEEECCCCCCEECCCCCC
MPVILTQPEEWRHWLTAPAEEALKLQRPLPDGRLKIVAEGVREDAV
EEEEEECCHHHHHHHCCCHHHHHHHHCCCCCCCEEEEEHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA