Definition Dinoroseobacter shibae DFL 12 plasmid pDSHI03, complete sequence.
Accession NC_009957
Length 126,304

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The map label for this gene is 159046502

Identifier: 159046502

GI number: 159046502

Start: 27382

End: 27945

Strand: Direct

Name: 159046502

Synonym: Dshi_3963

Alternate gene names: NA

Gene position: 27382-27945 (Clockwise)

Preceding gene: 159046501

Following gene: 159046503

Centisome position: 21.68

GC content: 61.88

Gene sequence:

>564_bases
GTGAACCCCGCCGACCCTCATTTGGCCAAAACCCGGCTGCTGGATTTTGACGCGACCTCAATTGCAAAACTGATCGAGGA
GCGCGGCTGGGCAGACCTTCCCAGCGACGACCGAATTGGGGCCATCTACGATTTCGTCAGGAACGAGATTACCTTCGGCT
ACAACCGCGCCGACGACATTCCGGCGTCCGAGGTCCTCGCAGATGGCCACGGGCAGTGCAACACCAAGGGCACGCTCCTC
ATGGCCCTGCTGCGTGGCGTGGGAGTTCGCTGCCGACTGCACGGGTTCACAATCCACAAGGCGCTTCAGAGAGGCGTCGT
TCCGGAACTCGTCTATCCCCTCGCGCCGTCCGAAATCCTCCACTCCTGGGTAGAGGTGGACTTGGGCGACGGATGGGTCA
ATCACCGCCAGAACTTCGGATTTGTGCGCGACTTGCTCTATCGCCACGTCATCCGTCACTGGATGAATGCCAGGGTTCGC
CGCATCCGCCGCGGAATCTTGCCGCCGGTCCCCGGATTCGATCGGCCGAACCACCGCCATGAGGAGACGAACCGTGCCGC
ATGA

Upstream 100 bases:

>100_bases
TGACGATCAGGTAACCAAGGACTCGGCCTGAAATCGGGGCTTGAAGCTACAGTGACTGTAGCAACTACATATTCTCGTGA
ACGATTCGAGGAGGTATCCC

Downstream 100 bases:

>100_bases
TCACGGCCACGCCCACATCGATCCTCAATCCGGTGATCGTCGCGTCTCCATCGCCATCTGGGCCAACGGCCTCCTGACGG
TCGCGCAGATCGTCGGCGGG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNPADPHLAKTRLLDFDATSIAKLIEERGWADLPSDDRIGAIYDFVRNEITFGYNRADDIPASEVLADGHGQCNTKGTLL
MALLRGVGVRCRLHGFTIHKALQRGVVPELVYPLAPSEILHSWVEVDLGDGWVNHRQNFGFVRDLLYRHVIRHWMNARVR
RIRRGILPPVPGFDRPNHRHEETNRAA

Sequences:

>Translated_187_residues
MNPADPHLAKTRLLDFDATSIAKLIEERGWADLPSDDRIGAIYDFVRNEITFGYNRADDIPASEVLADGHGQCNTKGTLL
MALLRGVGVRCRLHGFTIHKALQRGVVPELVYPLAPSEILHSWVEVDLGDGWVNHRQNFGFVRDLLYRHVIRHWMNARVR
RIRRGILPPVPGFDRPNHRHEETNRAA
>Mature_187_residues
MNPADPHLAKTRLLDFDATSIAKLIEERGWADLPSDDRIGAIYDFVRNEITFGYNRADDIPASEVLADGHGQCNTKGTLL
MALLRGVGVRCRLHGFTIHKALQRGVVPELVYPLAPSEILHSWVEVDLGDGWVNHRQNFGFVRDLLYRHVIRHWMNARVR
RIRRGILPPVPGFDRPNHRHEETNRAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21311; Mature: 21311

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNPADPHLAKTRLLDFDATSIAKLIEERGWADLPSDDRIGAIYDFVRNEITFGYNRADDI
CCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
PASEVLADGHGQCNTKGTLLMALLRGVGVRCRLHGFTIHKALQRGVVPELVYPLAPSEIL
CHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHCCCHHHHH
HSWVEVDLGDGWVNHRQNFGFVRDLLYRHVIRHWMNARVRRIRRGILPPVPGFDRPNHRH
HHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
EETNRAA
CCCCCCC
>Mature Secondary Structure
MNPADPHLAKTRLLDFDATSIAKLIEERGWADLPSDDRIGAIYDFVRNEITFGYNRADDI
CCCCCCCHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCC
PASEVLADGHGQCNTKGTLLMALLRGVGVRCRLHGFTIHKALQRGVVPELVYPLAPSEIL
CHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHCCCHHHHH
HSWVEVDLGDGWVNHRQNFGFVRDLLYRHVIRHWMNARVRRIRRGILPPVPGFDRPNHRH
HHHHHHCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
EETNRAA
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA