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The map label for this gene is 15899129

Identifier: 15899129

GI number: 15899129

Start: 2164806

End: 2165375

Strand: Reverse

Name: 15899129

Synonym: SSO2373

Alternate gene names: NA

Gene position: 2165375-2164806 (Counterclockwise)

Preceding gene: 15899130

Following gene: 15899126

Centisome position: 72.37

GC content: 33.33

Gene sequence:

>570_bases
TTGATAATCTTGTTCATCACGGTAGAAGATGAAAAATTAGAAGTAGTTAAAAAAGTGATTGGGAAACTAGAACAATTTAC
TGATACTAAAATTATATATGATGAAAGAACAAAAACTTTTAATATACTACCTAAGGGACAGAATCAGTACGAAACTCTTA
AGGCTGTCTCTGTAATAAGAGCAATAGGTTTAGGATTCGATGAGCAATCGGCCTTCAGATTGCTTAGCGATGAGTATACT
TTAGATGTAATCGATTTGAAAGCTCTTATAGGAAGTAATCCAGATACGATAAGAAGAGTAAAGGGAAGAATAATAGGAGA
AAATGGAAAAACTAAGAGAATAATACAAGAGTATACTGGAGTAGATATTTCCATTTACGGCCACTACATAGGAGTATTGG
GACCTTACGATCAAGTTCAAATAGCTAAAAAGGCGATAGAGCTTCTGATTGATGGGAAAGAGCATTCCTCAGTTTACAAG
TTCCTAGATAAGGCAGAAAAGGATCTGATAATATATAAAACTTCTAAATTAAGAAGAAAAGGGATTAGCGAGATCAAGGA
TAATGGATAA

Upstream 100 bases:

>100_bases
TGAAAAGGGACCTAGATAACATAAATAGATTTTTTGAGAATAAAGGAATAAATATAAGGCCTACAGAAGAGTTATTGATA
AAATACGGAGTTACTGGGGA

Downstream 100 bases:

>100_bases
GTGATACCTATTACTAATAGTCCTTATCACATTAGAATACGAGTCTAAAACTTCTTTATTTTTTTCATTCTCTAAAAATA
CTTTCAGCTCTTCCAATTGT

Product: putative RNA-processing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MIILFITVEDEKLEVVKKVIGKLEQFTDTKIIYDERTKTFNILPKGQNQYETLKAVSVIRAIGLGFDEQSAFRLLSDEYT
LDVIDLKALIGSNPDTIRRVKGRIIGENGKTKRIIQEYTGVDISIYGHYIGVLGPYDQVQIAKKAIELLIDGKEHSSVYK
FLDKAEKDLIIYKTSKLRRKGISEIKDNG

Sequences:

>Translated_189_residues
MIILFITVEDEKLEVVKKVIGKLEQFTDTKIIYDERTKTFNILPKGQNQYETLKAVSVIRAIGLGFDEQSAFRLLSDEYT
LDVIDLKALIGSNPDTIRRVKGRIIGENGKTKRIIQEYTGVDISIYGHYIGVLGPYDQVQIAKKAIELLIDGKEHSSVYK
FLDKAEKDLIIYKTSKLRRKGISEIKDNG
>Mature_189_residues
MIILFITVEDEKLEVVKKVIGKLEQFTDTKIIYDERTKTFNILPKGQNQYETLKAVSVIRAIGLGFDEQSAFRLLSDEYT
LDVIDLKALIGSNPDTIRRVKGRIIGENGKTKRIIQEYTGVDISIYGHYIGVLGPYDQVQIAKKAIELLIDGKEHSSVYK
FLDKAEKDLIIYKTSKLRRKGISEIKDNG

Specific function: Unknown

COG id: COG1094

COG function: function code R; Predicted RNA-binding protein (contains KH domains)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 KH domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004087
- InterPro:   IPR019964
- InterPro:   IPR004088
- InterPro:   IPR018111 [H]

Pfam domain/function: PF00013 KH_1 [H]

EC number: NA

Molecular weight: Translated: 21483; Mature: 21483

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
0.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
0.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIILFITVEDEKLEVVKKVIGKLEQFTDTKIIYDERTKTFNILPKGQNQYETLKAVSVIR
CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHH
AIGLGFDEQSAFRLLSDEYTLDVIDLKALIGSNPDTIRRVKGRIIGENGKTKRIIQEYTG
HHHCCCCCHHHHHHHCCCCEEEHHHHHHHHCCCHHHHHHHHCEEECCCCCHHHHHHHHCC
VDISIYGHYIGVLGPYDQVQIAKKAIELLIDGKEHSSVYKFLDKAEKDLIIYKTSKLRRK
CEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHHHHH
GISEIKDNG
CHHHHCCCC
>Mature Secondary Structure
MIILFITVEDEKLEVVKKVIGKLEQFTDTKIIYDERTKTFNILPKGQNQYETLKAVSVIR
CEEEEEEECCHHHHHHHHHHHHHHHHCCCEEEEECCCCEEEECCCCCCHHHHHHHHHHHH
AIGLGFDEQSAFRLLSDEYTLDVIDLKALIGSNPDTIRRVKGRIIGENGKTKRIIQEYTG
HHHCCCCCHHHHHHHCCCCEEEHHHHHHHHCCCHHHHHHHHCEEECCCCCHHHHHHHHCC
VDISIYGHYIGVLGPYDQVQIAKKAIELLIDGKEHSSVYKFLDKAEKDLIIYKTSKLRRK
CEEEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEEEEECHHHHHH
GISEIKDNG
CHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]