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The map label for this gene is 15898460

Identifier: 15898460

GI number: 15898460

Start: 1494297

End: 1494686

Strand: Reverse

Name: 15898460

Synonym: SSO1641

Alternate gene names: NA

Gene position: 1494686-1494297 (Counterclockwise)

Preceding gene: 15898465

Following gene: 15898459

Centisome position: 49.95

GC content: 36.67

Gene sequence:

>390_bases
ATGAGAGAAGAAGCAGAAAAATGGTTGAGACAAGCCTTAGAAGATTTAGCAACTGCTAAAGATACTATCACAACTGGTCA
TTATTATGCTTCAGCCTTTTGGGCCGAACAAGCTGCTGAGAAAGCTCTAAAAGCACTCTTAATAGCGGGAGGAAAGATCG
AGAGGACTCATGACTTAAATGAGTTGTTAGAGATAATAAAGGAAGAGATAGGATTATCCGTAGAGGAGATAAGAAGTGAA
GTAATCAAACTTACTTTACATTATACTATCTCTAGATATCCTGATGCTGCAAATACTATACCATATTCGTTATATAGTAA
GGAAGATGCTGAGGAGTTAGTAAAAAAAGCGGAAAAGGTGATAGAATGGGTAAAGCGAAATCTGCATTAA

Upstream 100 bases:

>100_bases
ATACACAAAAAGGTCGCAATTTTCACATGAGATGCCATCTCCCTTTACACTCCTTTTTAGGATAGTTATGATTAAAAGGC
CTAGATGCTAATCTAAACTG

Downstream 100 bases:

>100_bases
AAAGTCAAGTTGAATTGGTAAAAGTCGCAATAGAATTTATTAATGATATAAGTAATGAAATTAAAATTGAAGATATATAC
GTAGTGGGTTCTAGGGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 129

Protein sequence:

>129_residues
MREEAEKWLRQALEDLATAKDTITTGHYYASAFWAEQAAEKALKALLIAGGKIERTHDLNELLEIIKEEIGLSVEEIRSE
VIKLTLHYTISRYPDAANTIPYSLYSKEDAEELVKKAEKVIEWVKRNLH

Sequences:

>Translated_129_residues
MREEAEKWLRQALEDLATAKDTITTGHYYASAFWAEQAAEKALKALLIAGGKIERTHDLNELLEIIKEEIGLSVEEIRSE
VIKLTLHYTISRYPDAANTIPYSLYSKEDAEELVKKAEKVIEWVKRNLH
>Mature_129_residues
MREEAEKWLRQALEDLATAKDTITTGHYYASAFWAEQAAEKALKALLIAGGKIERTHDLNELLEIIKEEIGLSVEEIRSE
VIKLTLHYTISRYPDAANTIPYSLYSKEDAEELVKKAEKVIEWVKRNLH

Specific function: Unknown

COG id: COG2250

COG function: function code S; Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HEPN domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007842 [H]

Pfam domain/function: PF05168 HEPN [H]

EC number: NA

Molecular weight: Translated: 14814; Mature: 14814

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: PS50910 HEPN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREEAEKWLRQALEDLATAKDTITTGHYYASAFWAEQAAEKALKALLIAGGKIERTHDLN
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHH
ELLEIIKEEIGLSVEEIRSEVIKLTLHYTISRYPDAANTIPYSLYSKEDAEELVKKAEKV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHH
IEWVKRNLH
HHHHHHCCC
>Mature Secondary Structure
MREEAEKWLRQALEDLATAKDTITTGHYYASAFWAEQAAEKALKALLIAGGKIERTHDLN
CCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCHH
ELLEIIKEEIGLSVEEIRSEVIKLTLHYTISRYPDAANTIPYSLYSKEDAEELVKKAEKV
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCHHHHHHHHHHH
IEWVKRNLH
HHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]