Click here to switch to the map view.

The map label for this gene is 15897907

Identifier: 15897907

GI number: 15897907

Start: 900535

End: 901119

Strand: Reverse

Name: 15897907

Synonym: SSO1040

Alternate gene names: NA

Gene position: 901119-900535 (Counterclockwise)

Preceding gene: 15897910

Following gene: 15897906

Centisome position: 30.12

GC content: 35.04

Gene sequence:

>585_bases
ATGAGGCTCTTTATAGGCATAGAAGTACCGCAATCCCCAAAACTGCTTGAAATATTCGAGATAGTAAAAAATGCAGGAGC
CGACATAAAATTGGTCGAACCATATAACATTCACATTACACTATTATTCCTAGGCGAAGTTAGAGAGGATAGAGTAGAAG
AAGTGAAAGATTCAATGAGTGGGTTAAAATTCAATAAATTTAAAGTTACACTAAAAGGTTTAGGGGCATTTCCAAATTTA
ACAAGACCAAGAGTAGTTTGGGTTGGAATCGTTGAGGGCCAACAACAGCTTAGACAGATTAGATCTTATATACTTAACGA
GCTATTAAAGCGAAAAATTAGACCAGAAGACGATAAGGATTTCTCACCACATTTAACAATAGGCAGGGTAAAAAGCTACA
ACTCCATTAGCAACCTCATAAATACGATTAACGAGAATATGAACGTGGATATTGGAACCTTTGAAGTTAATAATGTTGTT
CTCTTTAAAAGCACGTTAACTCCAAAAGGTCCAATATATGATAAACTATTTGAAGTGAGTTCAATTGATAGAGGAGGAAG
TACTGAAGATAATAAAACCCACTGA

Upstream 100 bases:

>100_bases
ACAGCTTTGCAAATTCACTTTTTCCAGATCCTGGCATTCCAGTAATTAGAATGACTTTAATTGTGACCACCAAATAACTC
ATTATAGAGGTTTAAAAATT

Downstream 100 bases:

>100_bases
AGAAGACAAAAAAGGAATAGAAAAAGTATTGGAAATCATTAGGGAAAGGTTAAATAAATTAGATTTCGAGGTCGAGGGAT
CATTTAGGAAAGGAACTTGG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 194

Protein sequence:

>194_residues
MRLFIGIEVPQSPKLLEIFEIVKNAGADIKLVEPYNIHITLLFLGEVREDRVEEVKDSMSGLKFNKFKVTLKGLGAFPNL
TRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKDFSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVV
LFKSTLTPKGPIYDKLFEVSSIDRGGSTEDNKTH

Sequences:

>Translated_194_residues
MRLFIGIEVPQSPKLLEIFEIVKNAGADIKLVEPYNIHITLLFLGEVREDRVEEVKDSMSGLKFNKFKVTLKGLGAFPNL
TRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKDFSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVV
LFKSTLTPKGPIYDKLFEVSSIDRGGSTEDNKTH
>Mature_194_residues
MRLFIGIEVPQSPKLLEIFEIVKNAGADIKLVEPYNIHITLLFLGEVREDRVEEVKDSMSGLKFNKFKVTLKGLGAFPNL
TRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKDFSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVV
LFKSTLTPKGPIYDKLFEVSSIDRGGSTEDNKTH

Specific function: Unknown

COG id: COG1514

COG function: function code J; 2'-5' RNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0097 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004175
- InterPro:   IPR014051
- InterPro:   IPR009097 [H]

Pfam domain/function: PF02834 2_5_RNA_ligase [H]

EC number: NA

Molecular weight: Translated: 22099; Mature: 22099

Theoretical pI: Translated: 9.35; Mature: 9.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLFIGIEVPQSPKLLEIFEIVKNAGADIKLVEPYNIHITLLFLGEVREDRVEEVKDSMS
CEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCHHHHHHHHHHHC
GLKFNKFKVTLKGLGAFPNLTRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKD
CCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCC
FSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVVLFKSTLTPKGPIYDKLFEVS
CCCCEEEEHHHCHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHH
SIDRGGSTEDNKTH
CCCCCCCCCCCCCC
>Mature Secondary Structure
MRLFIGIEVPQSPKLLEIFEIVKNAGADIKLVEPYNIHITLLFLGEVREDRVEEVKDSMS
CEEEEEEECCCCCCHHHHHHHHHCCCCCEEEECCCEEEEEEEEECCCCHHHHHHHHHHHC
GLKFNKFKVTLKGLGAFPNLTRPRVVWVGIVEGQQQLRQIRSYILNELLKRKIRPEDDKD
CCEEEEEEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHCCCCCCCC
FSPHLTIGRVKSYNSISNLINTINENMNVDIGTFEVNNVVLFKSTLTPKGPIYDKLFEVS
CCCCEEEEHHHCHHHHHHHHHHHCCCCCEEEEEEEECCEEEEEECCCCCCCHHHHHHHHH
SIDRGGSTEDNKTH
CCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]