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The map label for this gene is 15897835

Identifier: 15897835

GI number: 15897835

Start: 810524

End: 811621

Strand: Reverse

Name: 15897835

Synonym: SSO0956

Alternate gene names: NA

Gene position: 811621-810524 (Counterclockwise)

Preceding gene: 15897836

Following gene: 15897834

Centisome position: 27.12

GC content: 37.61

Gene sequence:

>1098_bases
ATGTGCGATAGAATGTACAATATGCAAAGTAATTTAAGGATCGATACAGTAAGTGAGATATTCAAGGAGTTACAAAAAGA
AAAGTACCATATCATTGGAACTCATAGTGCATATAAGAAGTGTCATTGGACTCATTCTGCCCTTGTAGCCAACAGATCTT
GTTATAAGGGAAAATTCTATGGAATTGAGAGCCATAGATGTGTACAGATGACTCCAACTGCGGCTTGGTGCTGGTTTAGA
TGCGTACATTGTTGGAGATTAGAACCAGAGGATGTTGGACTAGAGTGGGACGATACGAAAATGCCCGCATATGATGATCC
AGAATATATTGTCGAAAGGAGTATAGAAGAACATAGGAAGGCCGTTTCTGGATATTTAGGAAGAAATGATGTTAGTATTC
AAAAAGTAAAAGATGCGATGAAACCCGCACATGTCGCAATAAGTTTAACTGGAGAACCCACACTTTATGAAAAACTGGGT
GATCTCATCAAGGAGTATCACAAAAGAGGTATGACAACCTTTCTTGTAACAAGTGGCGTAAGGCCAGACATATTGGCAAG
CTTAGAAGAAGAGCCTACTCAGTTATTTGTATCTCTACAAGCTCCGAATGAGATAAAACATAAGATGATTAACAGACCAG
TAGTAGCTAATTCTTGGCAACTAGTTATGAAGACCCTAGAGATCTTACCTAGTTTTAGTTCTCCAACGGTAATAAGATTT
ACAATGATAAAGGGGTACAATATGAGTGAACAAGATGCAAAAGAATTTGCGAAGTTAATGGAAATTGCCATGCCTACATA
TATAGAGATTAAAGCTTACATGCACGTGGGACCATCGACCTATAGATTAAGTAGAGACGCTATGCCAAAACATAAAGAGA
TTAGAGAATTTGCTAAAATCTTAGGACAATATACTGGATATAAAATCTTATCAGAACACGTGCCCAGTAGAATAGTTCTA
TTAAGTAAATTGGATAAGCCGATTAAGATTGGGAATGCGTGGAATGAAAAATGGAATTGGTCTACCATTGATATGGAGGA
CGATATGAGTGGAGAATATAAGGAAGCAGAACAAGGTTGTACAGAGGGATCAACTTGA

Upstream 100 bases:

>100_bases
AGATATTTATTTAATTAACATATCATCCTTTATAGAGAGAAATATAACAAAATTGTACAATTTAACCGCATCAGTTAAGA
TCTAATAATTTTTTAATCCT

Downstream 100 bases:

>100_bases
AAAGATGAGTCAAACGCTTGTATATTAGCTAAAATAATAGCCTACTCAAGGGGCAAATCGTACGTAACACAATCAGAGCT
AGCTAAGTTACTTAATTTCT

Product: tRNA-modifying enzyme

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 365; Mature: 365

Protein sequence:

>365_residues
MCDRMYNMQSNLRIDTVSEIFKELQKEKYHIIGTHSAYKKCHWTHSALVANRSCYKGKFYGIESHRCVQMTPTAAWCWFR
CVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHRKAVSGYLGRNDVSIQKVKDAMKPAHVAISLTGEPTLYEKLG
DLIKEYHKRGMTTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFSSPTVIRF
TMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEIREFAKILGQYTGYKILSEHVPSRIVL
LSKLDKPIKIGNAWNEKWNWSTIDMEDDMSGEYKEAEQGCTEGST

Sequences:

>Translated_365_residues
MCDRMYNMQSNLRIDTVSEIFKELQKEKYHIIGTHSAYKKCHWTHSALVANRSCYKGKFYGIESHRCVQMTPTAAWCWFR
CVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHRKAVSGYLGRNDVSIQKVKDAMKPAHVAISLTGEPTLYEKLG
DLIKEYHKRGMTTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFSSPTVIRF
TMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEIREFAKILGQYTGYKILSEHVPSRIVL
LSKLDKPIKIGNAWNEKWNWSTIDMEDDMSGEYKEAEQGCTEGST
>Mature_365_residues
MCDRMYNMQSNLRIDTVSEIFKELQKEKYHIIGTHSAYKKCHWTHSALVANRSCYKGKFYGIESHRCVQMTPTAAWCWFR
CVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHRKAVSGYLGRNDVSIQKVKDAMKPAHVAISLTGEPTLYEKLG
DLIKEYHKRGMTTFLVTSGVRPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFSSPTVIRF
TMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEIREFAKILGQYTGYKILSEHVPSRIVL
LSKLDKPIKIGNAWNEKWNWSTIDMEDDMSGEYKEAEQGCTEGST

Specific function: Unknown

COG id: COG0731

COG function: function code C; Fe-S oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0026 family [H]

Homologues:

Organism=Homo sapiens, GI50726981, Length=335, Percent_Identity=34.6268656716418, Blast_Score=198, Evalue=8e-51,
Organism=Homo sapiens, GI224282123, Length=307, Percent_Identity=30.6188925081433, Blast_Score=150, Evalue=2e-36,
Organism=Homo sapiens, GI224282125, Length=273, Percent_Identity=31.5018315018315, Blast_Score=139, Evalue=4e-33,
Organism=Saccharomyces cerevisiae, GI6325049, Length=327, Percent_Identity=33.3333333333333, Blast_Score=185, Evalue=1e-47,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR007197
- InterPro:   IPR013917 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08608 Wyosine_form [H]

EC number: NA

Molecular weight: Translated: 42196; Mature: 42196

Theoretical pI: Translated: 7.35; Mature: 7.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCDRMYNMQSNLRIDTVSEIFKELQKEKYHIIGTHSAYKKCHWTHSALVANRSCYKGKFY
CCCCHHCCCCCCEEHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEE
GIESHRCVQMTPTAAWCWFRCVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHRK
CCCCCCEEEECCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AVSGYLGRNDVSIQKVKDAMKPAHVAISLTGEPTLYEKLGDLIKEYHKRGMTTFLVTSGV
HHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
RPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFSSPTVIRF
CHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
TMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEIREFAKI
EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEECCCCCCCHHHHHHHHHH
LGQYTGYKILSEHVPSRIVLLSKLDKPIKIGNAWNEKWNWSTIDMEDDMSGEYKEAEQGC
HHHHCCHHHHHHHCCHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHCCC
TEGST
CCCCC
>Mature Secondary Structure
MCDRMYNMQSNLRIDTVSEIFKELQKEKYHIIGTHSAYKKCHWTHSALVANRSCYKGKFY
CCCCHHCCCCCCEEHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHHHHCCCCCCCEEE
GIESHRCVQMTPTAAWCWFRCVHCWRLEPEDVGLEWDDTKMPAYDDPEYIVERSIEEHRK
CCCCCCEEEECCHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
AVSGYLGRNDVSIQKVKDAMKPAHVAISLTGEPTLYEKLGDLIKEYHKRGMTTFLVTSGV
HHHHHCCCCCCHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCC
RPDILASLEEEPTQLFVSLQAPNEIKHKMINRPVVANSWQLVMKTLEILPSFSSPTVIRF
CHHHHHHHCCCCEEEEEEECCCHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCEEEE
TMIKGYNMSEQDAKEFAKLMEIAMPTYIEIKAYMHVGPSTYRLSRDAMPKHKEIREFAKI
EEEECCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCEEECCCCCCCHHHHHHHHHH
LGQYTGYKILSEHVPSRIVLLSKLDKPIKIGNAWNEKWNWSTIDMEDDMSGEYKEAEQGC
HHHHCCHHHHHHHCCHHHHHHHHCCCCEEECCCCCCCCCCEEECCCCCCCCCHHHHHCCC
TEGST
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]