Definition Sulfolobus solfataricus P2 chromosome, complete genome.
Accession NC_002754
Length 2,992,245

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The map label for this gene is gcvPB [H]

Identifier: 15897804

GI number: 15897804

Start: 779470

End: 780996

Strand: Reverse

Name: gcvPB [H]

Synonym: SSO0917

Alternate gene names: 15897804

Gene position: 780996-779470 (Counterclockwise)

Preceding gene: 15897805

Following gene: 15897800

Centisome position: 26.1

GC content: 37.72

Gene sequence:

>1527_bases
GTGTGGAGACAAGCTAAATGGAATGAGCCTTTAATATTCGAGCTAAACAAAAGTGGTGCAGCTAGACAAGGTTTCTTGAT
AAATAAGGACGAGGAGATAAGAAGTCAGATTAAGGAAATGAAAATACCTAAAAATCTCCTAAGGGAAAATGAGCCAGATC
TACCAAGTTTAAGTGAGCTAGAAGTAGTAAGACATTTCGTAAGACTATCTCAGATGAATTTTGGAGTAGATATTGGAATT
ATGCCACTAGGCTCATGTACAATGAAATATAATCCAAAGATTGAGGAGAAAGCTACAGCAATTACGGAATTTCATCACCC
CTTAGAGGATGAAGACTATATTCAAGGAATACTAGAGATGATTTACGAACTTCAGAACTGGTTTAGCGAAATAACCGGCA
TGGACGAATGTAGTTTACAAGTGCCGGCTGGATCTGCTGGTGAGTTCGCAGGAGTCCTAATGATTAAAAAGTACCATGAG
GAGCACAATAGAAATTATAAAGATACAATACTGGTCGCAGATACTGCTCATGGAACTAATCCTGCAAGTGCAGCAATGGC
TGGATACAAAGTTATGTATGTAAAATCAAATGCAGAAGGACTAGTAGACATGGATATCTTAAGGGAGATCGTAAACGATA
AAACTGCCGGCTTCATGCTAACTAATCCAAATACGTTGGGATTATTTGAGGAGAATATCCTAGAAATCTCCAAGATAATA
CATTCTACAAATGCTGTATTGTACTATGATGGAGCCAATTTAAATGGAGTGTTAGGTATTGCGAGGCCAGGAGATATGGG
ATTTGATATTGTACATTTAAACCTCCATAAGACATTCGCTGTTCCACATGGAGGAGGTGGACCTGGGGCAGGCGCAATTT
GTGCAAAGGGTGAACTCGTTAATTACCTCCCATATCCGATGGTAGAGAAGGTAAATGGAAAGTATAAGTTAAGCAAGATT
CCGAAGAATAGTATTGGTAAAATAGCTACATTTTACGGCAACGTTGGTAATTTAGCGCGTAGTTTTGCATACATATTAGG
ATTAGGACCTCAAGGTATTCAAATGATAGGAAAAATGAGTACTTTAGCGACTAATTATCTCATAGCTAAGTTAAGAGACG
TTAAAGAACTGGAGTTAATTGCGCCAAATAGGCATAGGAAGCACGAGGTAGTATTTAGCGTGAAACAGTTGATGGAAAAT
TATGGAGTAAGTGCTAACGATGTTGCTAAAGCCTTACTCGATAATGGATTTTACGCTCCAACCATATACTTCCCACCAAT
TGTCGAAGAAGCACTAATGATAGAGCCTACGGAAACTGAGACTAAAGAAACTTTAGATATGTTTGCCGAAACTCTTAAGA
AGATTGTGAATGATGCTAAAATAAACCCAGAACAAGTTATGAAAAGCCCTAATAATACAAGTATTGCAAGATTAGATCAA
GCTTATGCTAATCATCCTTCAACTATAACGCCAACATATAGAGTGTTAAGGCTGAGGAGGTTAGGTAAAATAGATTACCT
TAAATAA

Upstream 100 bases:

>100_bases
TTAAAATTGTCTATTCATACATCTCTCTTTTGTGTAACAGAGGTTCATGATAAAAAGTCAATAGATCTATTAGTATCAAC
GATACAAGAGGCGATAAAAA

Downstream 100 bases:

>100_bases
TAGATGAGAAAAGTATAGATATGTAACCAAGATAAGGTATTGAAAATGTAAAGTTACCAAACTCTACTATCTTCCCCACA
ACTAAATTTTTTGGGATCCC

Product: glycine dehydrogenase subunit 2

Products: NA

Alternate protein names: Glycine cleavage system P-protein subunit 2; Glycine decarboxylase subunit 2 [H]

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSELEVVRHFVRLSQMNFGVDIGI
MPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEMIYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHE
EHNRNYKDTILVADTAHGTNPASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII
HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELVNYLPYPMVEKVNGKYKLSKI
PKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMSTLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMEN
YGVSANDVAKALLDNGFYAPTIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ
AYANHPSTITPTYRVLRLRRLGKIDYLK

Sequences:

>Translated_508_residues
MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSELEVVRHFVRLSQMNFGVDIGI
MPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEMIYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHE
EHNRNYKDTILVADTAHGTNPASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII
HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELVNYLPYPMVEKVNGKYKLSKI
PKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMSTLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMEN
YGVSANDVAKALLDNGFYAPTIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ
AYANHPSTITPTYRVLRLRRLGKIDYLK
>Mature_508_residues
MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSELEVVRHFVRLSQMNFGVDIGI
MPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEMIYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHE
EHNRNYKDTILVADTAHGTNPASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII
HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELVNYLPYPMVEKVNGKYKLSKI
PKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMSTLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMEN
YGVSANDVAKALLDNGFYAPTIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ
AYANHPSTITPTYRVLRLRRLGKIDYLK

Specific function: The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide co

COG id: COG1003

COG function: function code E; Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gcvP family. C-terminal subunit subfamily [H]

Homologues:

Organism=Homo sapiens, GI108773801, Length=440, Percent_Identity=35, Blast_Score=234, Evalue=2e-61,
Organism=Escherichia coli, GI1789269, Length=403, Percent_Identity=37.7171215880893, Blast_Score=255, Evalue=4e-69,
Organism=Caenorhabditis elegans, GI17535605, Length=404, Percent_Identity=36.6336633663366, Blast_Score=229, Evalue=3e-60,
Organism=Caenorhabditis elegans, GI32564013, Length=354, Percent_Identity=37.2881355932203, Blast_Score=208, Evalue=4e-54,
Organism=Saccharomyces cerevisiae, GI6323843, Length=411, Percent_Identity=38.9294403892944, Blast_Score=259, Evalue=6e-70,
Organism=Drosophila melanogaster, GI24645648, Length=433, Percent_Identity=37.6443418013857, Blast_Score=254, Evalue=7e-68,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020580
- InterPro:   IPR020581
- InterPro:   IPR023012
- InterPro:   IPR015424
- InterPro:   IPR015421 [H]

Pfam domain/function: PF02347 GDC-P [H]

EC number: =1.4.4.2 [H]

Molecular weight: Translated: 56743; Mature: 56743

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSEL
CCCCCCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHH
EVVRHFVRLSQMNFGVDIGIMPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEM
HHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
IYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHEEHNRNYKDTILVADTAHGTN
HHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
PASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII
HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH
HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELV
HCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEECCCHH
NYLPYPMVEKVNGKYKLSKIPKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMS
CCCCCCHHHHCCCCEEECCCCCCHHCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH
TLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMENYGVSANDVAKALLDNGFYAP
HHHHHHHHHHHHCHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
TIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ
EEECCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHH
AYANHPSTITPTYRVLRLRRLGKIDYLK
HHCCCCCCCCHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSEL
CCCCCCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHH
EVVRHFVRLSQMNFGVDIGIMPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEM
HHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHH
IYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHEEHNRNYKDTILVADTAHGTN
HHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
PASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII
HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH
HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELV
HCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEECCCHH
NYLPYPMVEKVNGKYKLSKIPKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMS
CCCCCCHHHHCCCCEEECCCCCCHHCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH
TLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMENYGVSANDVAKALLDNGFYAP
HHHHHHHHHHHHCHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
TIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ
EEECCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHH
AYANHPSTITPTYRVLRLRRLGKIDYLK
HHCCCCCCCCHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA