Definition | Sulfolobus solfataricus P2 chromosome, complete genome. |
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Accession | NC_002754 |
Length | 2,992,245 |
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The map label for this gene is gcvPB [H]
Identifier: 15897804
GI number: 15897804
Start: 779470
End: 780996
Strand: Reverse
Name: gcvPB [H]
Synonym: SSO0917
Alternate gene names: 15897804
Gene position: 780996-779470 (Counterclockwise)
Preceding gene: 15897805
Following gene: 15897800
Centisome position: 26.1
GC content: 37.72
Gene sequence:
>1527_bases GTGTGGAGACAAGCTAAATGGAATGAGCCTTTAATATTCGAGCTAAACAAAAGTGGTGCAGCTAGACAAGGTTTCTTGAT AAATAAGGACGAGGAGATAAGAAGTCAGATTAAGGAAATGAAAATACCTAAAAATCTCCTAAGGGAAAATGAGCCAGATC TACCAAGTTTAAGTGAGCTAGAAGTAGTAAGACATTTCGTAAGACTATCTCAGATGAATTTTGGAGTAGATATTGGAATT ATGCCACTAGGCTCATGTACAATGAAATATAATCCAAAGATTGAGGAGAAAGCTACAGCAATTACGGAATTTCATCACCC CTTAGAGGATGAAGACTATATTCAAGGAATACTAGAGATGATTTACGAACTTCAGAACTGGTTTAGCGAAATAACCGGCA TGGACGAATGTAGTTTACAAGTGCCGGCTGGATCTGCTGGTGAGTTCGCAGGAGTCCTAATGATTAAAAAGTACCATGAG GAGCACAATAGAAATTATAAAGATACAATACTGGTCGCAGATACTGCTCATGGAACTAATCCTGCAAGTGCAGCAATGGC TGGATACAAAGTTATGTATGTAAAATCAAATGCAGAAGGACTAGTAGACATGGATATCTTAAGGGAGATCGTAAACGATA AAACTGCCGGCTTCATGCTAACTAATCCAAATACGTTGGGATTATTTGAGGAGAATATCCTAGAAATCTCCAAGATAATA CATTCTACAAATGCTGTATTGTACTATGATGGAGCCAATTTAAATGGAGTGTTAGGTATTGCGAGGCCAGGAGATATGGG ATTTGATATTGTACATTTAAACCTCCATAAGACATTCGCTGTTCCACATGGAGGAGGTGGACCTGGGGCAGGCGCAATTT GTGCAAAGGGTGAACTCGTTAATTACCTCCCATATCCGATGGTAGAGAAGGTAAATGGAAAGTATAAGTTAAGCAAGATT CCGAAGAATAGTATTGGTAAAATAGCTACATTTTACGGCAACGTTGGTAATTTAGCGCGTAGTTTTGCATACATATTAGG ATTAGGACCTCAAGGTATTCAAATGATAGGAAAAATGAGTACTTTAGCGACTAATTATCTCATAGCTAAGTTAAGAGACG TTAAAGAACTGGAGTTAATTGCGCCAAATAGGCATAGGAAGCACGAGGTAGTATTTAGCGTGAAACAGTTGATGGAAAAT TATGGAGTAAGTGCTAACGATGTTGCTAAAGCCTTACTCGATAATGGATTTTACGCTCCAACCATATACTTCCCACCAAT TGTCGAAGAAGCACTAATGATAGAGCCTACGGAAACTGAGACTAAAGAAACTTTAGATATGTTTGCCGAAACTCTTAAGA AGATTGTGAATGATGCTAAAATAAACCCAGAACAAGTTATGAAAAGCCCTAATAATACAAGTATTGCAAGATTAGATCAA GCTTATGCTAATCATCCTTCAACTATAACGCCAACATATAGAGTGTTAAGGCTGAGGAGGTTAGGTAAAATAGATTACCT TAAATAA
Upstream 100 bases:
>100_bases TTAAAATTGTCTATTCATACATCTCTCTTTTGTGTAACAGAGGTTCATGATAAAAAGTCAATAGATCTATTAGTATCAAC GATACAAGAGGCGATAAAAA
Downstream 100 bases:
>100_bases TAGATGAGAAAAGTATAGATATGTAACCAAGATAAGGTATTGAAAATGTAAAGTTACCAAACTCTACTATCTTCCCCACA ACTAAATTTTTTGGGATCCC
Product: glycine dehydrogenase subunit 2
Products: NA
Alternate protein names: Glycine cleavage system P-protein subunit 2; Glycine decarboxylase subunit 2 [H]
Number of amino acids: Translated: 508; Mature: 508
Protein sequence:
>508_residues MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSELEVVRHFVRLSQMNFGVDIGI MPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEMIYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHE EHNRNYKDTILVADTAHGTNPASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELVNYLPYPMVEKVNGKYKLSKI PKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMSTLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMEN YGVSANDVAKALLDNGFYAPTIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ AYANHPSTITPTYRVLRLRRLGKIDYLK
Sequences:
>Translated_508_residues MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSELEVVRHFVRLSQMNFGVDIGI MPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEMIYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHE EHNRNYKDTILVADTAHGTNPASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELVNYLPYPMVEKVNGKYKLSKI PKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMSTLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMEN YGVSANDVAKALLDNGFYAPTIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ AYANHPSTITPTYRVLRLRRLGKIDYLK >Mature_508_residues MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSELEVVRHFVRLSQMNFGVDIGI MPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEMIYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHE EHNRNYKDTILVADTAHGTNPASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELVNYLPYPMVEKVNGKYKLSKI PKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMSTLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMEN YGVSANDVAKALLDNGFYAPTIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ AYANHPSTITPTYRVLRLRRLGKIDYLK
Specific function: The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide co
COG id: COG1003
COG function: function code E; Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the gcvP family. C-terminal subunit subfamily [H]
Homologues:
Organism=Homo sapiens, GI108773801, Length=440, Percent_Identity=35, Blast_Score=234, Evalue=2e-61, Organism=Escherichia coli, GI1789269, Length=403, Percent_Identity=37.7171215880893, Blast_Score=255, Evalue=4e-69, Organism=Caenorhabditis elegans, GI17535605, Length=404, Percent_Identity=36.6336633663366, Blast_Score=229, Evalue=3e-60, Organism=Caenorhabditis elegans, GI32564013, Length=354, Percent_Identity=37.2881355932203, Blast_Score=208, Evalue=4e-54, Organism=Saccharomyces cerevisiae, GI6323843, Length=411, Percent_Identity=38.9294403892944, Blast_Score=259, Evalue=6e-70, Organism=Drosophila melanogaster, GI24645648, Length=433, Percent_Identity=37.6443418013857, Blast_Score=254, Evalue=7e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020580 - InterPro: IPR020581 - InterPro: IPR023012 - InterPro: IPR015424 - InterPro: IPR015421 [H]
Pfam domain/function: PF02347 GDC-P [H]
EC number: =1.4.4.2 [H]
Molecular weight: Translated: 56743; Mature: 56743
Theoretical pI: Translated: 6.58; Mature: 6.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 3.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 3.9 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSEL CCCCCCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHH EVVRHFVRLSQMNFGVDIGIMPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEM HHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHH IYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHEEHNRNYKDTILVADTAHGTN HHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC PASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELV HCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEECCCHH NYLPYPMVEKVNGKYKLSKIPKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMS CCCCCCHHHHCCCCEEECCCCCCHHCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH TLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMENYGVSANDVAKALLDNGFYAP HHHHHHHHHHHHCHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC TIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ EEECCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHH AYANHPSTITPTYRVLRLRRLGKIDYLK HHCCCCCCCCHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MWRQAKWNEPLIFELNKSGAARQGFLINKDEEIRSQIKEMKIPKNLLRENEPDLPSLSEL CCCCCCCCCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHCCCHHHHHCCCCCCCCHHHH EVVRHFVRLSQMNFGVDIGIMPLGSCTMKYNPKIEEKATAITEFHHPLEDEDYIQGILEM HHHHHHHHHHHCCCCEEEEEEECCCEEEEECCCHHHHHHHHHHHCCCCCCHHHHHHHHHH IYELQNWFSEITGMDECSLQVPAGSAGEFAGVLMIKKYHEEHNRNYKDTILVADTAHGTN HHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC PASAAMAGYKVMYVKSNAEGLVDMDILREIVNDKTAGFMLTNPNTLGLFEENILEISKII HHHHHHCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHHH HSTNAVLYYDGANLNGVLGIARPGDMGFDIVHLNLHKTFAVPHGGGGPGAGAICAKGELV HCCCEEEEECCCCCCEEEEECCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCEEECCCHH NYLPYPMVEKVNGKYKLSKIPKNSIGKIATFYGNVGNLARSFAYILGLGPQGIQMIGKMS CCCCCCHHHHCCCCEEECCCCCCHHCCHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHH TLATNYLIAKLRDVKELELIAPNRHRKHEVVFSVKQLMENYGVSANDVAKALLDNGFYAP HHHHHHHHHHHHCHHHHEEECCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC TIYFPPIVEEALMIEPTETETKETLDMFAETLKKIVNDAKINPEQVMKSPNNTSIARLDQ EEECCHHHHHHHEECCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCHHHHHHH AYANHPSTITPTYRVLRLRRLGKIDYLK HHCCCCCCCCHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA