Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is dppB [H]
Identifier: 15889782
GI number: 15889782
Start: 2485530
End: 2486549
Strand: Reverse
Name: dppB [H]
Synonym: Atu2517
Alternate gene names: 15889782
Gene position: 2486549-2485530 (Counterclockwise)
Preceding gene: 159185251
Following gene: 15889781
Centisome position: 87.51
GC content: 59.71
Gene sequence:
>1020_bases GTGACATTGAACAAGCGCGTCAAAAGCATATCGTCGATACTGGGCAGCGTCATCCTGACGCTGTTCGGTTTGATGATCAT CACCTTCATGATCGGGCGCGTCATGCCTGTCGATCCCGTCATCGCGGCGGTCGGCGACAACGCGCCTGAAGACGTCATCG TGCGGGTTCGGGCGGAAATGGGTCTCGACCAGCCGCTGGTCGTGCAGTTCTTCCATTATGTCACGCAGGTTCTGCATGGT GACTTCGGCAATTCGATCCTGACCCGCAATCCGGTCTGGATCGATATCAAGCGTGTTTTCCCGGCCACTTTCGAACTTGC CACCGCAGCCCTCATTCTGGCGGCGTTGATCGGCATTCCGCTGGGTGTCTGGGCTGCCGTGAAGCAGGGCAAGCTGACCG ACCAGGTGATCCGCGTCGTCTGCCTTGCCGGTCACTCCGTGCCCGTCTTCATGCTGGCGCTGATTTCGCTGCTGGTGTTT TACGCCACGCTTGGCGTCGCGCCGGGACCGGGCCGGCAGGACATCATCTATGACGGCATGATCACGCAGGTCACCGGCCT GATGACGGTCGATACGCTGCTTGCTGGCGACTGGGGTGCCTTTTACGATGCGGTTGCCCATATGGTGCAGCCGGTCTGCA TTCTTGCCTATTTCAGCATGGCCTATATTACCCGCATGACGCGCGCCTTCATGATCGATGCGCTGAAGGGCGAATATGTC ATCACCGCCCGTGCCAAGGGGCTTTCGGCCATGACCGTGATCTGGGGCCATGCTTTCCCCACGGTCGCCGTGCAGCTCGT CACGGTTCTGGCGCTCACCTATGCCGGCCTTCTCGAAGGTGCCGTGGTAACGGAAACCGTCTTCAGCTGGCCGGGCCTCG GCCAATACCTCACCGTCTCGCTGATGAACGCGGACATGAACCCCGTCGTCGGAGCAACCCTGTTGATCGGCATTATCTAT GTCGGCCTCAACCTGCTTGCAGACGTGCTTTACCGAGTAATGGATCCCCGCGTTCGATGA
Upstream 100 bases:
>100_bases TGTTCCAGACCACGAAGACGGCTGCCTTCCGCAAGGGCGTCTCCGGCTTTGAACTCGGCGTTCTCTCCGAGGGCAATTCC TACCACGATGCGAAGAAAGC
Downstream 100 bases:
>100_bases TGTTAGCTAATTTCAGAAACTGGGCGCTGGACGAGACGCCGCATTCCCGCACACAGGCTGCGTGGGGAAACCGGTATCGC ATCTGGCTCAACCTCAAGTC
Product: ABC transporter, membrane spanning protein (dipeptide)
Products: ADP; phosphate; dipeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 339; Mature: 338
Protein sequence:
>339_residues MTLNKRVKSISSILGSVILTLFGLMIITFMIGRVMPVDPVIAAVGDNAPEDVIVRVRAEMGLDQPLVVQFFHYVTQVLHG DFGNSILTRNPVWIDIKRVFPATFELATAALILAALIGIPLGVWAAVKQGKLTDQVIRVVCLAGHSVPVFMLALISLLVF YATLGVAPGPGRQDIIYDGMITQVTGLMTVDTLLAGDWGAFYDAVAHMVQPVCILAYFSMAYITRMTRAFMIDALKGEYV ITARAKGLSAMTVIWGHAFPTVAVQLVTVLALTYAGLLEGAVVTETVFSWPGLGQYLTVSLMNADMNPVVGATLLIGIIY VGLNLLADVLYRVMDPRVR
Sequences:
>Translated_339_residues MTLNKRVKSISSILGSVILTLFGLMIITFMIGRVMPVDPVIAAVGDNAPEDVIVRVRAEMGLDQPLVVQFFHYVTQVLHG DFGNSILTRNPVWIDIKRVFPATFELATAALILAALIGIPLGVWAAVKQGKLTDQVIRVVCLAGHSVPVFMLALISLLVF YATLGVAPGPGRQDIIYDGMITQVTGLMTVDTLLAGDWGAFYDAVAHMVQPVCILAYFSMAYITRMTRAFMIDALKGEYV ITARAKGLSAMTVIWGHAFPTVAVQLVTVLALTYAGLLEGAVVTETVFSWPGLGQYLTVSLMNADMNPVVGATLLIGIIY VGLNLLADVLYRVMDPRVR >Mature_338_residues TLNKRVKSISSILGSVILTLFGLMIITFMIGRVMPVDPVIAAVGDNAPEDVIVRVRAEMGLDQPLVVQFFHYVTQVLHGD FGNSILTRNPVWIDIKRVFPATFELATAALILAALIGIPLGVWAAVKQGKLTDQVIRVVCLAGHSVPVFMLALISLLVFY ATLGVAPGPGRQDIIYDGMITQVTGLMTVDTLLAGDWGAFYDAVAHMVQPVCILAYFSMAYITRMTRAFMIDALKGEYVI TARAKGLSAMTVIWGHAFPTVAVQLVTVLALTYAGLLEGAVVTETVFSWPGLGQYLTVSLMNADMNPVVGATLLIGIIYV GLNLLADVLYRVMDPRVR
Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane [H]
COG id: COG0601
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transmembrane type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1789965, Length=329, Percent_Identity=40.7294832826748, Blast_Score=238, Evalue=5e-64, Organism=Escherichia coli, GI1787761, Length=323, Percent_Identity=39.938080495356, Blast_Score=214, Evalue=6e-57, Organism=Escherichia coli, GI1787053, Length=330, Percent_Identity=32.1212121212121, Blast_Score=167, Evalue=7e-43, Organism=Escherichia coli, GI1789888, Length=317, Percent_Identity=29.9684542586751, Blast_Score=154, Evalue=1e-38, Organism=Escherichia coli, GI1787497, Length=323, Percent_Identity=30.030959752322, Blast_Score=152, Evalue=2e-38, Organism=Escherichia coli, GI1787550, Length=267, Percent_Identity=31.8352059925094, Blast_Score=142, Evalue=4e-35, Organism=Escherichia coli, GI1788504, Length=295, Percent_Identity=25.4237288135593, Blast_Score=107, Evalue=1e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000515 [H]
Pfam domain/function: PF00528 BPD_transp_1 [H]
EC number: NA
Molecular weight: Translated: 36658; Mature: 36527
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS50928 ABC_TM1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 4.7 %Met (Translated Protein) 5.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 4.4 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTLNKRVKSISSILGSVILTLFGLMIITFMIGRVMPVDPVIAAVGDNAPEDVIVRVRAEM CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHC GLDQPLVVQFFHYVTQVLHGDFGNSILTRNPVWIDIKRVFPATFELATAALILAALIGIP CCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHH LGVWAAVKQGKLTDQVIRVVCLAGHSVPVFMLALISLLVFYATLGVAPGPGRQDIIYDGM HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH ITQVTGLMTVDTLLAGDWGAFYDAVAHMVQPVCILAYFSMAYITRMTRAFMIDALKGEYV HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE ITARAKGLSAMTVIWGHAFPTVAVQLVTVLALTYAGLLEGAVVTETVFSWPGLGQYLTVS EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH LMNADMNPVVGATLLIGIIYVGLNLLADVLYRVMDPRVR HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure TLNKRVKSISSILGSVILTLFGLMIITFMIGRVMPVDPVIAAVGDNAPEDVIVRVRAEM CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHHC GLDQPLVVQFFHYVTQVLHGDFGNSILTRNPVWIDIKRVFPATFELATAALILAALIGIP CCCCHHHHHHHHHHHHHHHCCCCCCCEECCCCEEEHHHHCCHHHHHHHHHHHHHHHHHHH LGVWAAVKQGKLTDQVIRVVCLAGHSVPVFMLALISLLVFYATLGVAPGPGRQDIIYDGM HHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCH ITQVTGLMTVDTLLAGDWGAFYDAVAHMVQPVCILAYFSMAYITRMTRAFMIDALKGEYV HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE ITARAKGLSAMTVIWGHAFPTVAVQLVTVLALTYAGLLEGAVVTETVFSWPGLGQYLTVS EEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHH LMNADMNPVVGATLLIGIIYVGLNLLADVLYRVMDPRVR HHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; dipeptides [Periplasm]; H2O [C]
Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]