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The map label for this gene is qseD [H]

Identifier: 15889777

GI number: 15889777

Start: 2480450

End: 2481370

Strand: Reverse

Name: qseD [H]

Synonym: Atu2512

Alternate gene names: 15889777

Gene position: 2481370-2480450 (Counterclockwise)

Preceding gene: 159185249

Following gene: 159185244

Centisome position: 87.32

GC content: 60.69

Gene sequence:

>921_bases
ATGTTTTTGTTGGGAGTGTGCGCCTTGGAAGTCAAATGGCTCGAGGATTTCCTGGCGCTGGCCGGAACGCTCAATTTTTC
AAAGGCCGCGGATGAGCGGCATGTGACGCAATCCGCCTTCAGTCGGCGCATCAAGCAGCTGGAAGCCTGGGTGGGTGCGA
CGCTGGTCGACCGTGCCTCCTATCCGTCGCGGCTGACGGAGGCCGGGGCGAAGTTCGTGCCGGTGGCGCAGGAGACGCTG
AAGCAGCTTTACCATGCGCGGCGCACGCTGCTGCAGGAAGAAGGAGCCGATGCCAGAACCGTTCGGTTGACGGCCCTGCA
TACCCTGTCCTTCACCTTCTTTCCCGACTGGCTGAAGCGCGTGAACGAAAAGGCGGGACCGCTGTTTTCCGTTCTGCGGC
CGGATTCCGGCAGCATGGAGGAAAACCTCAATTCACTCGTGGACGGGCAGAGCGATTTTCTTCTGACCTATGCCCATCAC
GAAGTGCCGATGCTACTCGATGCGCAGCTGTTCGAATTCCGCGTGCTCGGCGCGGAAAACATCATTCCCGTTTCCGCGCC
AACACAGGATGGCGCACCGCTGCATGCGCTGGTGGAAAATGCGAAAAAACCCTTTGCCTATCTGGATTATGAAAAAGCCT
CGTTCTTCGGGCCGCTGCTGCGCGATCTCTTGAGCGCGCGGCTGCCGCAATACGAGCGGGTGCATGAGGGCAGCATGTCG
GTGGGGCTGAAAGCCATGGCGATGGCCGGCTGGGGGGTCGCCTGGGTGCCGGAAAGCCTGATGCGACAGGAACTGGACAG
CGGCGCCCTAGTGCGCGCCGCCGATCCGAGTTTCGATATTACCGTCGATATCAGGCTTTATCGCTCGAAGGAGAACCGCC
GGCCCGTGGTCGAGCGCATTTGGGCGGTTCTCGAAGACTAG

Upstream 100 bases:

>100_bases
CAGCCGGGCGCGGATGATCGAATATTGGAGGGGCCTTTAAAAGGGTTTCATTCGTAGCAGGTTGATCCTAATAAAGACGC
TTTCCGCATAGACGGAACAG

Downstream 100 bases:

>100_bases
AGCATTTTCACGAAAAGTGGACCCCGGTTTTCCGTCCGGAAATGCGGCAGGACAAGGGCTCTCGGCTCAGATCGCTGTGC
GGCGGGCGTTTTCGAGGTAG

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: Quorum-sensing regulator protein D [H]

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MFLLGVCALEVKWLEDFLALAGTLNFSKAADERHVTQSAFSRRIKQLEAWVGATLVDRASYPSRLTEAGAKFVPVAQETL
KQLYHARRTLLQEEGADARTVRLTALHTLSFTFFPDWLKRVNEKAGPLFSVLRPDSGSMEENLNSLVDGQSDFLLTYAHH
EVPMLLDAQLFEFRVLGAENIIPVSAPTQDGAPLHALVENAKKPFAYLDYEKASFFGPLLRDLLSARLPQYERVHEGSMS
VGLKAMAMAGWGVAWVPESLMRQELDSGALVRAADPSFDITVDIRLYRSKENRRPVVERIWAVLED

Sequences:

>Translated_306_residues
MFLLGVCALEVKWLEDFLALAGTLNFSKAADERHVTQSAFSRRIKQLEAWVGATLVDRASYPSRLTEAGAKFVPVAQETL
KQLYHARRTLLQEEGADARTVRLTALHTLSFTFFPDWLKRVNEKAGPLFSVLRPDSGSMEENLNSLVDGQSDFLLTYAHH
EVPMLLDAQLFEFRVLGAENIIPVSAPTQDGAPLHALVENAKKPFAYLDYEKASFFGPLLRDLLSARLPQYERVHEGSMS
VGLKAMAMAGWGVAWVPESLMRQELDSGALVRAADPSFDITVDIRLYRSKENRRPVVERIWAVLED
>Mature_306_residues
MFLLGVCALEVKWLEDFLALAGTLNFSKAADERHVTQSAFSRRIKQLEAWVGATLVDRASYPSRLTEAGAKFVPVAQETL
KQLYHARRTLLQEEGADARTVRLTALHTLSFTFFPDWLKRVNEKAGPLFSVLRPDSGSMEENLNSLVDGQSDFLLTYAHH
EVPMLLDAQLFEFRVLGAENIIPVSAPTQDGAPLHALVENAKKPFAYLDYEKASFFGPLLRDLLSARLPQYERVHEGSMS
VGLKAMAMAGWGVAWVPESLMRQELDSGALVRAADPSFDITVDIRLYRSKENRRPVVERIWAVLED

Specific function: Down-regulates expression of the flagellar regulon, decreasing motility [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790783, Length=299, Percent_Identity=32.4414715719064, Blast_Score=135, Evalue=3e-33,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34319; Mature: 34319

Theoretical pI: Translated: 5.93; Mature: 5.93

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFLLGVCALEVKWLEDFLALAGTLNFSKAADERHVTQSAFSRRIKQLEAWVGATLVDRAS
CEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YPSRLTEAGAKFVPVAQETLKQLYHARRTLLQEEGADARTVRLTALHTLSFTFFPDWLKR
CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
VNEKAGPLFSVLRPDSGSMEENLNSLVDGQSDFLLTYAHHEVPMLLDAQLFEFRVLGAEN
HHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHEEEECCCC
IIPVSAPTQDGAPLHALVENAKKPFAYLDYEKASFFGPLLRDLLSARLPQYERVHEGSMS
EEECCCCCCCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHH
VGLKAMAMAGWGVAWVPESLMRQELDSGALVRAADPSFDITVDIRLYRSKENRRPVVERI
HHHHHHHHHCCCHHHCCHHHHHHHCCCCCEEEECCCCEEEEEEEEEEECCCCCCHHHHHH
WAVLED
HHHHCC
>Mature Secondary Structure
MFLLGVCALEVKWLEDFLALAGTLNFSKAADERHVTQSAFSRRIKQLEAWVGATLVDRAS
CEEEHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
YPSRLTEAGAKFVPVAQETLKQLYHARRTLLQEEGADARTVRLTALHTLSFTFFPDWLKR
CCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHHHHHHHH
VNEKAGPLFSVLRPDSGSMEENLNSLVDGQSDFLLTYAHHEVPMLLDAQLFEFRVLGAEN
HHHHCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHEEEECCCC
IIPVSAPTQDGAPLHALVENAKKPFAYLDYEKASFFGPLLRDLLSARLPQYERVHEGSMS
EEECCCCCCCCCHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHHHHCCCHHHHHCCCHH
VGLKAMAMAGWGVAWVPESLMRQELDSGALVRAADPSFDITVDIRLYRSKENRRPVVERI
HHHHHHHHHCCCHHHCCHHHHHHHCCCCCEEEECCCCEEEEEEEEEEECCCCCCHHHHHH
WAVLED
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503; 7876157 [H]