Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889606
Identifier: 15889606
GI number: 15889606
Start: 2303688
End: 2304395
Strand: Reverse
Name: 15889606
Synonym: Atu2329
Alternate gene names: NA
Gene position: 2304395-2303688 (Counterclockwise)
Preceding gene: 159185160
Following gene: 15889605
Centisome position: 81.1
GC content: 62.85
Gene sequence:
>708_bases ATGCGATACGCCATTCATTTCACGCCTTCCCCCAATGACCCGCTGACGCAGGCTGCCGCCGCGTGGCTGGGGCGCGATGT CTATTCCGGTCATGCGGTGGAGCCGCCGGGCACGATCGATCTCGGCATGCAGGAGATTTCCTACCACACGGCCCTGCCGC GCCGTTACGGTTTCCACGGCACCATCAAAGCGCCTTTCCGCCTCGCCGAGGGCCAGTCCGAAGCGGCGTTGCTGCGCGAC CTGATGTATTTTTCCGGCAGGCAGGATCCCTTCACGCTGCCGCAACTGGTGGTGGCAAGACAGGAGAATGTCTTCAGCCT CGTTCCCGAGCGTCCCTGCGAAGTGCTGCATTTCTTTGCCGCCCGCGTGGTGCAGGAATTCGACCATTACCGCGCACCGC TCTCCGAGGCGGAAATCGAGCGTGCCGATCCGGATCGGCTATCGGCCTCGCAGCTCACCAATCTGCACCGCTGGGGTAGC CCGCATGTCATGGATGAATTCCGTTTCCAGATGTCGCTGACGGGCGGTGTGGACCCTTCCAGCAGCCAGAGGATCGAGCG GGCCGTCCGCAAGGTGTTCGAGCCGCTCTTGACCAGGACGCTGCAATTTTCCAGCCTCGCGCTTTTCATCGAGGATGAGC CCGGTGCGCCTTTCCGCGTGCATTCGCTGCATCCCATGGGCCGCGTTTCAGCCCGCAAGATTGCCTGA
Upstream 100 bases:
>100_bases CTGATTGGACCACTTACGTCGTTAATCTGTCACGCAAATCACTTATCTGCTGGCCTGCAAAGAGGCCGGTTTGTCCGCAT TTGCGGCGAGGTGACAGCGC
Downstream 100 bases:
>100_bases AGCACGCCTGCTGATAATCGTATACAAAAAAGCATCGGAATGTCGGCAAGATTGTCTCGACATTCCGGATGCGGATGTTA CCGTTCGGCATCGCATATCC
Product: hypothetical protein
Products: NA
Alternate protein names: Xylose Isomerase; Conserved Hypothethical Protein DUF
Number of amino acids: Translated: 235; Mature: 235
Protein sequence:
>235_residues MRYAIHFTPSPNDPLTQAAAAWLGRDVYSGHAVEPPGTIDLGMQEISYHTALPRRYGFHGTIKAPFRLAEGQSEAALLRD LMYFSGRQDPFTLPQLVVARQENVFSLVPERPCEVLHFFAARVVQEFDHYRAPLSEAEIERADPDRLSASQLTNLHRWGS PHVMDEFRFQMSLTGGVDPSSSQRIERAVRKVFEPLLTRTLQFSSLALFIEDEPGAPFRVHSLHPMGRVSARKIA
Sequences:
>Translated_235_residues MRYAIHFTPSPNDPLTQAAAAWLGRDVYSGHAVEPPGTIDLGMQEISYHTALPRRYGFHGTIKAPFRLAEGQSEAALLRD LMYFSGRQDPFTLPQLVVARQENVFSLVPERPCEVLHFFAARVVQEFDHYRAPLSEAEIERADPDRLSASQLTNLHRWGS PHVMDEFRFQMSLTGGVDPSSSQRIERAVRKVFEPLLTRTLQFSSLALFIEDEPGAPFRVHSLHPMGRVSARKIA >Mature_235_residues MRYAIHFTPSPNDPLTQAAAAWLGRDVYSGHAVEPPGTIDLGMQEISYHTALPRRYGFHGTIKAPFRLAEGQSEAALLRD LMYFSGRQDPFTLPQLVVARQENVFSLVPERPCEVLHFFAARVVQEFDHYRAPLSEAEIERADPDRLSASQLTNLHRWGS PHVMDEFRFQMSLTGGVDPSSSQRIERAVRKVFEPLLTRTLQFSSLALFIEDEPGAPFRVHSLHPMGRVSARKIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 26538; Mature: 26538
Theoretical pI: Translated: 7.09; Mature: 7.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRYAIHFTPSPNDPLTQAAAAWLGRDVYSGHAVEPPGTIDLGMQEISYHTALPRRYGFHG CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCC TIKAPFRLAEGQSEAALLRDLMYFSGRQDPFTLPQLVVARQENVFSLVPERPCEVLHFFA CCCCCEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHH ARVVQEFDHYRAPLSEAEIERADPDRLSASQLTNLHRWGSPHVMDEFRFQMSLTGGVDPS HHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHEEEEECCCCCCC SSQRIERAVRKVFEPLLTRTLQFSSLALFIEDEPGAPFRVHSLHPMGRVSARKIA HHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCEEEECCCCCCCCHHHCCC >Mature Secondary Structure MRYAIHFTPSPNDPLTQAAAAWLGRDVYSGHAVEPPGTIDLGMQEISYHTALPRRYGFHG CCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHCCCCC TIKAPFRLAEGQSEAALLRDLMYFSGRQDPFTLPQLVVARQENVFSLVPERPCEVLHFFA CCCCCEEECCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHH ARVVQEFDHYRAPLSEAEIERADPDRLSASQLTNLHRWGSPHVMDEFRFQMSLTGGVDPS HHHHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHCCCCCHHHHHHEEEEECCCCCCC SSQRIERAVRKVFEPLLTRTLQFSSLALFIEDEPGAPFRVHSLHPMGRVSARKIA HHHHHHHHHHHHHHHHHHHHHHHCEEEEEEECCCCCCEEEECCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA