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The map label for this gene is yqhC [H]

Identifier: 15889309

GI number: 15889309

Start: 1982112

End: 1983017

Strand: Reverse

Name: yqhC [H]

Synonym: Atu2021

Alternate gene names: 15889309

Gene position: 1983017-1982112 (Counterclockwise)

Preceding gene: 159185014

Following gene: 15889308

Centisome position: 69.79

GC content: 62.47

Gene sequence:

>906_bases
ATGTCCTTCCCGTTCAATGTCTATCAGGAGATCGCCGCCATCGCCGCGCGGCACGCCACCCATGACGGTGAGGTGCGGAC
GGCGATCGAATCCCTCGGCATCAGTCGGCGCACGATCCCCAGCGCACCATGCCACGGCAATTACCGCCCCTGTCTCGCTA
TGGTAATCCAGGGGTCGAAAAGCGTGCAATTGGGCACGGACACCATAAATTACGGCGCGGGTGATTATCTTCTGACATCG
CTCGATCTGCCTGTTGCATGGCGGGTGGTGGAGGCGAGCCGGGAGGTGCCGCATTTCTGTATTGCCCTTGCCATCGATAG
TGAAAAGCTGCTCGATCTCATGCGCCGCATACCGATCGATCCATCTTCGGAGCCGGCGAATGCGCAGCGCGGCATCGTCG
TCAACAGGGCAACACCGGAACTTCTCGATGCGGCCATACGGCTCCTGCGCTTGCTTGATCGTCCAGCCGACATCGCCGCC
ATGGCGCCGCTGATCGAGCAGGAGATCCTCTATCGCATCCTGACCGGACCGGCCGGCGGGCAATTGATGAACGTCATCGC
GGCCGGCAGCCACGGCAACCGCATCGCCCGCGCCATCGCCTGGCTGCGCGAGAATTTCGCGCGCCAGCTCCGGATCGAAG
AGCTGGCCGAACAGATCGGCATGAGCGTTTCGTCCTTCCACCATCATTTCAAGACGATCACGGCCATGACGCCGGTGCAG
TATCAGAAGCAGCTTCGCCTGCACGAGGCGCGCCGGCTGATGCTGCTGGAGCGGCTGGATGCCGGCACCGCCGGTCATCG
CGTCGGTTACCAGAGCCCGTCGCAGTTCAGCCGCGAATATAGCCGGTTTTATGGATTGTCGCCGTCGCGGGATGTTGACG
CCTCGCGTGAGATAGCGGCGGGGTAG

Upstream 100 bases:

>100_bases
TCCTGCAAAAAATACACATCGTGCTCTTTGCGGATGGCGGGCGGCTTTCTAGATAAGCAACATCCAATACATCTCTTCTT
TCAGTTAAGGGATTTCCCCC

Downstream 100 bases:

>100_bases
ATGGGGTGTCCATTCACGGCAGATCTGTGGTGCGTGGGGCTTTACCCCCCTCTGCCCTGCCGGGCATCTCCCCCTCAAGG
GGGGAGATCGATATGCGGCA

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 301; Mature: 300

Protein sequence:

>301_residues
MSFPFNVYQEIAAIAARHATHDGEVRTAIESLGISRRTIPSAPCHGNYRPCLAMVIQGSKSVQLGTDTINYGAGDYLLTS
LDLPVAWRVVEASREVPHFCIALAIDSEKLLDLMRRIPIDPSSEPANAQRGIVVNRATPELLDAAIRLLRLLDRPADIAA
MAPLIEQEILYRILTGPAGGQLMNVIAAGSHGNRIARAIAWLRENFARQLRIEELAEQIGMSVSSFHHHFKTITAMTPVQ
YQKQLRLHEARRLMLLERLDAGTAGHRVGYQSPSQFSREYSRFYGLSPSRDVDASREIAAG

Sequences:

>Translated_301_residues
MSFPFNVYQEIAAIAARHATHDGEVRTAIESLGISRRTIPSAPCHGNYRPCLAMVIQGSKSVQLGTDTINYGAGDYLLTS
LDLPVAWRVVEASREVPHFCIALAIDSEKLLDLMRRIPIDPSSEPANAQRGIVVNRATPELLDAAIRLLRLLDRPADIAA
MAPLIEQEILYRILTGPAGGQLMNVIAAGSHGNRIARAIAWLRENFARQLRIEELAEQIGMSVSSFHHHFKTITAMTPVQ
YQKQLRLHEARRLMLLERLDAGTAGHRVGYQSPSQFSREYSRFYGLSPSRDVDASREIAAG
>Mature_300_residues
SFPFNVYQEIAAIAARHATHDGEVRTAIESLGISRRTIPSAPCHGNYRPCLAMVIQGSKSVQLGTDTINYGAGDYLLTSL
DLPVAWRVVEASREVPHFCIALAIDSEKLLDLMRRIPIDPSSEPANAQRGIVVNRATPELLDAAIRLLRLLDRPADIAAM
APLIEQEILYRILTGPAGGQLMNVIAAGSHGNRIARAIAWLRENFARQLRIEELAEQIGMSVSSFHHHFKTITAMTPVQY
QKQLRLHEARRLMLLERLDAGTAGHRVGYQSPSQFSREYSRFYGLSPSRDVDASREIAAG

Specific function: Unknown

COG id: COG2207

COG function: function code K; AraC-type DNA-binding domain-containing proteins

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082197, Length=244, Percent_Identity=36.8852459016393, Blast_Score=173, Evalue=1e-44,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018060
- InterPro:   IPR009594 [H]

Pfam domain/function: PF06719 AraC_N; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33316; Mature: 33184

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFPFNVYQEIAAIAARHATHDGEVRTAIESLGISRRTIPSAPCHGNYRPCLAMVIQGSK
CCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
SVQLGTDTINYGAGDYLLTSLDLPVAWRVVEASREVPHFCIALAIDSEKLLDLMRRIPID
CEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCC
PSSEPANAQRGIVVNRATPELLDAAIRLLRLLDRPADIAAMAPLIEQEILYRILTGPAGG
CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH
QLMNVIAAGSHGNRIARAIAWLRENFARQLRIEELAEQIGMSVSSFHHHFKTITAMTPVQ
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHH
YQKQLRLHEARRLMLLERLDAGTAGHRVGYQSPSQFSREYSRFYGLSPSRDVDASREIAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCC
G
C
>Mature Secondary Structure 
SFPFNVYQEIAAIAARHATHDGEVRTAIESLGISRRTIPSAPCHGNYRPCLAMVIQGSK
CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCC
SVQLGTDTINYGAGDYLLTSLDLPVAWRVVEASREVPHFCIALAIDSEKLLDLMRRIPID
CEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEEECHHHHHHHHHHCCCC
PSSEPANAQRGIVVNRATPELLDAAIRLLRLLDRPADIAAMAPLIEQEILYRILTGPAGG
CCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCH
QLMNVIAAGSHGNRIARAIAWLRENFARQLRIEELAEQIGMSVSSFHHHFKTITAMTPVQ
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCHH
YQKQLRLHEARRLMLLERLDAGTAGHRVGYQSPSQFSREYSRFYGLSPSRDVDASREIAA
HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCHHHCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]