Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889308
Identifier: 15889308
GI number: 15889308
Start: 1981059
End: 1981712
Strand: Reverse
Name: 15889308
Synonym: Atu2020
Alternate gene names: NA
Gene position: 1981712-1981059 (Counterclockwise)
Preceding gene: 15889309
Following gene: 15889307
Centisome position: 69.74
GC content: 62.23
Gene sequence:
>654_bases TTGGCTTCCGACCCGATCACAACGCAGGAATTTTCGCCGCGCCAGAACGCCGTTCTGGACCAGGCATTGCGTCTATTGGT CGAGGGCGGCGAGAAAGCGCTCACCACATCCGGGCTGGCGCGTGCCGCCAACTGTTCGAAGGAAAGCCTCTACAAATGGT TCGGCGATCGCGACGGCCTGCTGGCGGCGATGATCACCTTCCAGCAGAGCAAGGTTCGCACCTTCGAGAAAGCGGGCGAC CGCGTCTCCGCGCCGCAGCTTGCCGATCATCTCGAGGTTTTCGCACATGATCTGCTGGACGTGCTGGCGGGCGATGTATC GCTGGCGCTCAATCGTCTTGCCATCGGGCAGGCGAGCCGCGACGGTTCGAAGCTTGGCGATCTGCTGCTGGAACGCGGCC GTCGCCAGATCGACCGCCGCGCCCGTGGACTGATCGAGGCGGGTCGCCGTTCCGGCTACCTGCGTTTCGATGACGCCGAA GAGGCGTATCGCAGTTTTTACGGCCTCATCGTTTCGGATTTGCATGTGCGCATGCTGCTGGGCGAGGCGCCGGACAAGGA TTTTTCCGCCCGGGCCAAGAAGGCGGTCGTCGCCTTTTTGACGCTCTATGGAACGGAAAAGGTGCATTCGGAACTGGGCG GCAAGGTCGCTTAA
Upstream 100 bases:
>100_bases TCCCTCTAAAGAATCCGCTTGACCGCAACGCTGCCTCCGCTTAAATGGCGCTCGAACCGTACCGTACGGTACATCAATCT AGCCCCTGGAGTGGAAAGAC
Downstream 100 bases:
>100_bases GGTTCCGGTTAAGACAATAGAGACAAGCATTAGGGAAGGACCATAAAATGCGCGTTTATTATGATCGTGATGCGGATCTC AATCTCATCAAGTCCAAGAA
Product: TetR family transcriptional regulator
Products: NA
Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Transcriptional Regulator TetR Family Protein; Transcriptional Regulator Protein; Regulatory Protein TetR
Number of amino acids: Translated: 217; Mature: 216
Protein sequence:
>217_residues MASDPITTQEFSPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGD RVSAPQLADHLEVFAHDLLDVLAGDVSLALNRLAIGQASRDGSKLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFDDAE EAYRSFYGLIVSDLHVRMLLGEAPDKDFSARAKKAVVAFLTLYGTEKVHSELGGKVA
Sequences:
>Translated_217_residues MASDPITTQEFSPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGD RVSAPQLADHLEVFAHDLLDVLAGDVSLALNRLAIGQASRDGSKLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFDDAE EAYRSFYGLIVSDLHVRMLLGEAPDKDFSARAKKAVVAFLTLYGTEKVHSELGGKVA >Mature_216_residues ASDPITTQEFSPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGLLAAMITFQQSKVRTFEKAGDR VSAPQLADHLEVFAHDLLDVLAGDVSLALNRLAIGQASRDGSKLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFDDAEE AYRSFYGLIVSDLHVRMLLGEAPDKDFSARAKKAVVAFLTLYGTEKVHSELGGKVA
Specific function: Unknown
COG id: COG1309
COG function: function code K; Transcriptional regulator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 23795; Mature: 23664
Theoretical pI: Translated: 8.45; Mature: 8.45
Prosite motif: PS50977 HTH_TETR_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASDPITTQEFSPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGL CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCH LAAMITFQQSKVRTFEKAGDRVSAPQLADHLEVFAHDLLDVLAGDVSLALNRLAIGQASR HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DGSKLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFDDAEEAYRSFYGLIVSDLHVRMLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH GEAPDKDFSARAKKAVVAFLTLYGTEKVHSELGGKVA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure ASDPITTQEFSPRQNAVLDQALRLLVEGGEKALTTSGLARAANCSKESLYKWFGDRDGL CCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCHHHHHHHHCCCCCH LAAMITFQQSKVRTFEKAGDRVSAPQLADHLEVFAHDLLDVLAGDVSLALNRLAIGQASR HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC DGSKLGDLLLERGRRQIDRRARGLIEAGRRSGYLRFDDAEEAYRSFYGLIVSDLHVRMLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHHHH GEAPDKDFSARAKKAVVAFLTLYGTEKVHSELGGKVA CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA