Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is tuf [H]
Identifier: 15889258
GI number: 15889258
Start: 1936382
End: 1937557
Strand: Reverse
Name: tuf [H]
Synonym: Atu1966
Alternate gene names: 15889258
Gene position: 1937557-1936382 (Counterclockwise)
Preceding gene: 159184995
Following gene: 159184993
Centisome position: 68.19
GC content: 58.67
Gene sequence:
>1176_bases ATGGCAAAGAGCAAGTTTGAGCGCAATAAGCCGCACGTCAACATTGGCACGATCGGTCACGTCGACCACGGCAAGACGTC GTTGACTGCTGCGATCACGAAGTATTTCGGCGAGTTCAAGGCGTATGACCAAATCGACGCCGCTCCTGAAGAAAAGGCTC GTGGTATCACGATTTCGACGGCGCACGTTGAGTATGAGACGCCTGCGCGTCACTACGCCCACGTTGACTGCCCCGGCCAC GCCGACTATGTGAAGAACATGATCACCGGTGCTGCCCAGATGGACGGCGCGATCCTGGTTTGCTCGGCTGCCGACGGCCC GATGCCACAGACCCGCGAGCACATCCTGCTTGCCCGTCAGGTTGGCGTTCCGGCCATCGTCGTGTTCCTCAACAAGGTCG ACCAGGTTGACGACGCCGAGCTTCTCGAGCTCGTCGAGCTTGAAGTTCGCGAACTTCTGTCGTCCTACGACTTCCCGGGC GACGATATCCCGATCATCAAGGGTTCGGCACTTGCTGCTCTTGAAGATTCTGACAAGAAGATCGGTGAAGACGCGATCCG CGAGCTGATGGCTGCTGTCGACGCCTACATCCCGACGCCCGAGCGTCCGATCGACCAGCCGTTCCTGATGCCGATCGAAG ACGTGTTCTCGATCTCGGGTCGTGGTACGGTTGTGACGGGTCGCGTTGAGCGCGGTATCGTCAAGGTTGGTGAAGAAGTC GAAATCGTCGGCATCCGTCCGACCTCGAAGACGACTGTTACCGGCGTTGAAATGTTCCGCAAGCTGCTCGACCAGGGCCA GGCCGGCGACAACATCGGTGCACTCGTTCGCGGCGTTACCCGTGACGGCGTCGAGCGTGGTCAGATCCTGTGCAAGCCGG GTTCGGTCAAGCCGCACAAGAAGTTCATGGCAGAAGCCTACATCCTGACGAAGGAAGAAGGCGGTCGTCATACGCCGTTC TTCACGAACTACCGTCCGCAGTTCTACTTCCGTACGACTGACGTTACCGGTATCGTTTCGCTTCCTGAAGGCACGGAAAT GGTTATGCCTGGCGACAACGTCACTGTTGAAGTCGAGCTGATCGTTCCGATCGCGATGGAAGAAAAGCTGCGCTTCGCTA TCCGCGAAGGCGGCCGTACCGTCGGCGCCGGCATCGTTGCTTCGATCGTCGAGTAA
Upstream 100 bases:
>100_bases TTCACAATTAAGTCTTGCGCATTCGCTTACAAAGCCTTAAACGGCGACACCAAACCGGTTCGCCGGGAAATCGACTTCAC GTTCACAGGAAGCAATTCAC
Downstream 100 bases:
>100_bases TTTTCAGGCCTGAAAAGGCTTGAAGGAAACCCCGCTGGAAACAGCGGGGTTTTTTGTTTTGTATTGGGGCTTGGAAGAGG GGTGGCTTTCGCTCTTCGGC
Product: elongation factor Tu
Products: GDP; phosphate
Alternate protein names: EF-Tu 2 [H]
Number of amino acids: Translated: 391; Mature: 390
Protein sequence:
>391_residues MAKSKFERNKPHVNIGTIGHVDHGKTSLTAAITKYFGEFKAYDQIDAAPEEKARGITISTAHVEYETPARHYAHVDCPGH ADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPAIVVFLNKVDQVDDAELLELVELEVRELLSSYDFPG DDIPIIKGSALAALEDSDKKIGEDAIRELMAAVDAYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEV EIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALVRGVTRDGVERGQILCKPGSVKPHKKFMAEAYILTKEEGGRHTPF FTNYRPQFYFRTTDVTGIVSLPEGTEMVMPGDNVTVEVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE
Sequences:
>Translated_391_residues MAKSKFERNKPHVNIGTIGHVDHGKTSLTAAITKYFGEFKAYDQIDAAPEEKARGITISTAHVEYETPARHYAHVDCPGH ADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPAIVVFLNKVDQVDDAELLELVELEVRELLSSYDFPG DDIPIIKGSALAALEDSDKKIGEDAIRELMAAVDAYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEV EIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALVRGVTRDGVERGQILCKPGSVKPHKKFMAEAYILTKEEGGRHTPF FTNYRPQFYFRTTDVTGIVSLPEGTEMVMPGDNVTVEVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE >Mature_390_residues AKSKFERNKPHVNIGTIGHVDHGKTSLTAAITKYFGEFKAYDQIDAAPEEKARGITISTAHVEYETPARHYAHVDCPGHA DYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQVGVPAIVVFLNKVDQVDDAELLELVELEVRELLSSYDFPGD DIPIIKGSALAALEDSDKKIGEDAIRELMAAVDAYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEVE IVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALVRGVTRDGVERGQILCKPGSVKPHKKFMAEAYILTKEEGGRHTPFF TNYRPQFYFRTTDVTGIVSLPEGTEMVMPGDNVTVEVELIVPIAMEEKLRFAIREGGRTVGAGIVASIVE
Specific function: This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis [H]
COG id: COG0050
COG function: function code J; GTPases - translation elongation factors
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily [H]
Homologues:
Organism=Homo sapiens, GI34147630, Length=394, Percent_Identity=55.8375634517767, Blast_Score=474, Evalue=1e-134, Organism=Homo sapiens, GI223555963, Length=440, Percent_Identity=28.4090909090909, Blast_Score=165, Evalue=5e-41, Organism=Homo sapiens, GI5729864, Length=440, Percent_Identity=28.4090909090909, Blast_Score=165, Evalue=8e-41, Organism=Homo sapiens, GI4503475, Length=448, Percent_Identity=28.3482142857143, Blast_Score=158, Evalue=8e-39, Organism=Homo sapiens, GI4503471, Length=448, Percent_Identity=28.3482142857143, Blast_Score=157, Evalue=2e-38, Organism=Homo sapiens, GI54607086, Length=313, Percent_Identity=28.1150159744409, Blast_Score=118, Evalue=8e-27, Organism=Homo sapiens, GI194018520, Length=320, Percent_Identity=29.375, Blast_Score=112, Evalue=9e-25, Organism=Homo sapiens, GI194018522, Length=320, Percent_Identity=29.375, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI194097354, Length=320, Percent_Identity=29.375, Blast_Score=111, Evalue=9e-25, Organism=Homo sapiens, GI46094014, Length=322, Percent_Identity=30.4347826086957, Blast_Score=111, Evalue=1e-24, Organism=Homo sapiens, GI4503507, Length=269, Percent_Identity=27.5092936802974, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI157426893, Length=290, Percent_Identity=26.8965517241379, Blast_Score=65, Evalue=1e-10, Organism=Escherichia coli, GI1789737, Length=395, Percent_Identity=74.4303797468354, Blast_Score=582, Evalue=1e-167, Organism=Escherichia coli, GI1790412, Length=395, Percent_Identity=74.4303797468354, Blast_Score=582, Evalue=1e-167, Organism=Escherichia coli, GI2367247, Length=374, Percent_Identity=31.5508021390374, Blast_Score=142, Evalue=3e-35, Organism=Escherichia coli, GI48994988, Length=237, Percent_Identity=33.3333333333333, Blast_Score=105, Evalue=5e-24, Organism=Escherichia coli, GI1789108, Length=211, Percent_Identity=30.8056872037915, Blast_Score=79, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17556456, Length=402, Percent_Identity=50.9950248756219, Blast_Score=399, Evalue=1e-111, Organism=Caenorhabditis elegans, GI25141371, Length=387, Percent_Identity=43.6692506459948, Blast_Score=323, Evalue=1e-88, Organism=Caenorhabditis elegans, GI17552884, Length=451, Percent_Identity=30.820399113082, Blast_Score=167, Evalue=7e-42, Organism=Caenorhabditis elegans, GI17569207, Length=451, Percent_Identity=30.820399113082, Blast_Score=167, Evalue=7e-42, Organism=Caenorhabditis elegans, GI32566303, Length=431, Percent_Identity=29.0023201856148, Blast_Score=145, Evalue=3e-35, Organism=Caenorhabditis elegans, GI17506081, Length=297, Percent_Identity=29.96632996633, Blast_Score=122, Evalue=3e-28, Organism=Caenorhabditis elegans, GI115532067, Length=441, Percent_Identity=26.0770975056689, Blast_Score=119, Evalue=2e-27, Organism=Caenorhabditis elegans, GI115532065, Length=441, Percent_Identity=26.0770975056689, Blast_Score=119, Evalue=4e-27, Organism=Caenorhabditis elegans, GI32566629, Length=438, Percent_Identity=25.1141552511416, Blast_Score=117, Evalue=8e-27, Organism=Caenorhabditis elegans, GI32566301, Length=166, Percent_Identity=33.7349397590361, Blast_Score=88, Evalue=9e-18, Organism=Caenorhabditis elegans, GI17509919, Length=277, Percent_Identity=25.9927797833935, Blast_Score=77, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17557151, Length=231, Percent_Identity=26.4069264069264, Blast_Score=69, Evalue=5e-12, Organism=Saccharomyces cerevisiae, GI6324761, Length=398, Percent_Identity=65.8291457286432, Blast_Score=528, Evalue=1e-151, Organism=Saccharomyces cerevisiae, GI6325337, Length=443, Percent_Identity=30.2483069977427, Blast_Score=163, Evalue=3e-41, Organism=Saccharomyces cerevisiae, GI6319594, Length=443, Percent_Identity=30.2483069977427, Blast_Score=163, Evalue=3e-41, Organism=Saccharomyces cerevisiae, GI6322937, Length=273, Percent_Identity=27.1062271062271, Blast_Score=89, Evalue=1e-18, Organism=Saccharomyces cerevisiae, GI6320377, Length=339, Percent_Identity=28.6135693215339, Blast_Score=86, Evalue=8e-18, Organism=Saccharomyces cerevisiae, GI6320863, Length=269, Percent_Identity=27.5092936802974, Blast_Score=75, Evalue=1e-14, Organism=Saccharomyces cerevisiae, GI6323098, Length=137, Percent_Identity=30.6569343065693, Blast_Score=65, Evalue=3e-11, Organism=Saccharomyces cerevisiae, GI6323320, Length=244, Percent_Identity=27.8688524590164, Blast_Score=64, Evalue=5e-11, Organism=Drosophila melanogaster, GI281363316, Length=393, Percent_Identity=58.2697201017812, Blast_Score=482, Evalue=1e-136, Organism=Drosophila melanogaster, GI17864358, Length=393, Percent_Identity=58.2697201017812, Blast_Score=482, Evalue=1e-136, Organism=Drosophila melanogaster, GI19921738, Length=384, Percent_Identity=49.7395833333333, Blast_Score=395, Evalue=1e-110, Organism=Drosophila melanogaster, GI45553807, Length=450, Percent_Identity=28.6666666666667, Blast_Score=157, Evalue=1e-38, Organism=Drosophila melanogaster, GI45553816, Length=450, Percent_Identity=28.6666666666667, Blast_Score=157, Evalue=1e-38, Organism=Drosophila melanogaster, GI24651721, Length=450, Percent_Identity=28.6666666666667, Blast_Score=157, Evalue=1e-38, Organism=Drosophila melanogaster, GI17864154, Length=450, Percent_Identity=28.6666666666667, Blast_Score=157, Evalue=1e-38, Organism=Drosophila melanogaster, GI24652838, Length=450, Percent_Identity=29.3333333333333, Blast_Score=154, Evalue=7e-38, Organism=Drosophila melanogaster, GI17137572, Length=450, Percent_Identity=29.3333333333333, Blast_Score=154, Evalue=7e-38, Organism=Drosophila melanogaster, GI19922690, Length=299, Percent_Identity=31.7725752508361, Blast_Score=127, Evalue=9e-30, Organism=Drosophila melanogaster, GI45550900, Length=436, Percent_Identity=27.0642201834862, Blast_Score=123, Evalue=3e-28, Organism=Drosophila melanogaster, GI17137380, Length=337, Percent_Identity=29.673590504451, Blast_Score=116, Evalue=2e-26, Organism=Drosophila melanogaster, GI24647046, Length=269, Percent_Identity=26.3940520446097, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24647048, Length=269, Percent_Identity=26.3940520446097, Blast_Score=79, Evalue=4e-15, Organism=Drosophila melanogaster, GI24582462, Length=148, Percent_Identity=31.7567567567568, Blast_Score=65, Evalue=7e-11, Organism=Drosophila melanogaster, GI28572034, Length=159, Percent_Identity=35.8490566037736, Blast_Score=65, Evalue=9e-11,
Paralogues:
None
Copy number: 20568 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000795 - InterPro: IPR005225 - InterPro: IPR009001 - InterPro: IPR004161 - InterPro: IPR004541 - InterPro: IPR004160 - InterPro: IPR009000 [H]
Pfam domain/function: PF00009 GTP_EFTU; PF03144 GTP_EFTU_D2; PF03143 GTP_EFTU_D3 [H]
EC number: 3.6.5.3
Molecular weight: Translated: 42626; Mature: 42495
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: PS00301 EFACTOR_GTP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKSKFERNKPHVNIGTIGHVDHGKTSLTAAITKYFGEFKAYDQIDAAPEEKARGITIST CCCCCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHHHHCCHHCCCCCHHHHCCEEEEE AHVEYETPARHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ EEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH VGVPAIVVFLNKVDQVDDAELLELVELEVRELLSSYDFPGDDIPIIKGSALAALEDSDKK CCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEEECCCCHH IGEDAIRELMAAVDAYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEV HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECHHHHCHHCCCCEE EIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALVRGVTRDGVERGQILCKPGSVKPHK EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHH KFMAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIVSLPEGTEMVMPGDNVTVEVEL HHHHHEEEEEECCCCCCCCEEECCCCEEEEEECCCEEEEECCCCCEEEECCCCEEEEEEE IVPIAMEEKLRFAIREGGRTVGAGIVASIVE EEEECHHHHHHHHHHHCCCEEHHHHHHHHCC >Mature Secondary Structure AKSKFERNKPHVNIGTIGHVDHGKTSLTAAITKYFGEFKAYDQIDAAPEEKARGITIST CCCCCCCCCCEEEECEEECCCCCCHHHHHHHHHHHHHHHCCHHCCCCCHHHHCCEEEEE AHVEYETPARHYAHVDCPGHADYVKNMITGAAQMDGAILVCSAADGPMPQTREHILLARQ EEEEECCCCCCEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH VGVPAIVVFLNKVDQVDDAELLELVELEVRELLSSYDFPGDDIPIIKGSALAALEDSDKK CCCCEEEEEHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCCEEEEECCCCHH IGEDAIRELMAAVDAYIPTPERPIDQPFLMPIEDVFSISGRGTVVTGRVERGIVKVGEEV HHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCEEEECHHHHCHHCCCCEE EIVGIRPTSKTTVTGVEMFRKLLDQGQAGDNIGALVRGVTRDGVERGQILCKPGSVKPHK EEEEECCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCEEEECCCCCCHHH KFMAEAYILTKEEGGRHTPFFTNYRPQFYFRTTDVTGIVSLPEGTEMVMPGDNVTVEVEL HHHHHEEEEEECCCCCCCCEEECCCCEEEEEECCCEEEEECCCCCEEEECCCCEEEEEEE IVPIAMEEKLRFAIREGGRTVGAGIVASIVE EEEECHHHHHHHHHHHCCCEEHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: GTP; H2O
Specific reaction: GTP + H2O = GDP + phosphate
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA