Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889211
Identifier: 15889211
GI number: 15889211
Start: 1894045
End: 1895385
Strand: Reverse
Name: 15889211
Synonym: Atu1917
Alternate gene names: NA
Gene position: 1895385-1894045 (Counterclockwise)
Preceding gene: 159184978
Following gene: 159184977
Centisome position: 66.7
GC content: 58.69
Gene sequence:
>1341_bases ATGCTCGGGCTTGTCCCGAGCATCTGCAACCAATCGATGTTATGCGACGTGGATGCCCGGGACAGGCCCGAGCATGACGT CGAACGTGATGTGCGATTTACAGTCGTTCGATCAGCCGCTCTCTGGGCGGCTTTTTGCTGTCCGAACCAGATGACGCACC TTGGTTCACAAACAGATTCAAGTGCCTCGCAGGCTGATTCTCTAACTCCCTTCAACATTCTGTTTTCCCATAATAAATGC GAAATTGCCGGCTCGCCGTCTGCCACGCAGCAGTCACATTGGAGTGATGTTCGTCCAGCGACCCTTTTCCAGAACGCGGC GATGCCTAACTTCATCACCATGAAAAGACGAACCGCACTTACCCTCATCGCCTCGCTGCCTTTTGCTCCGCTGGCCCGCG CGCAAAGCGCCGGCAACAACATCCGTTTCGATCCGTTGCTGACGCAGGCGGATGCACTTTCCAGCCTCAAGGCGGTGATT GTCAGCATCGATGGCGAGGAAGTCGCCAGCCGCGCTTATCATGGTGCCAGCCTCAACGGTTCCACCAATATCAAGTCGGC GTCGAAGTCGGTCATTTCGGCGCTGGTGGGCATGGCGATCGATCGCAAGATCATTGAGGGCGCAGATCAGCCGATCGCGA CCATCCTGCGCGGTGATTTTCCGCCTAACCCCGATCCGCGGCTGGAGCGGATTACCGTGGGCAATCTTCTTTCCATGCAA TCCGGTCTGGAGCGCATGTCCGGCCCGAATTATGGCCGCTGGGTTGCCAGCCGCAACTGGGTAAGAATGGCGCTGGGGTC CGGTTTCGCGGGCGAGCCTGGTGGCGGCATGCTTTATTCCACGGCCTCCACACATCTGCTCTCGGCGATATTAACGAAGG CATCCGGCCGCTCGACGCTTTCTCTTGCCCGAGACTGGTTCCGCCCGCTGGAAGGGTTCTCCATTGGCGGCTGGGAGCGT GATCCGCAGGGCATCTATCTCGGTGGCAACCAGATGGCGATGACGGCGCGTTCCCTGCTGGCCTTTGGCGAGCTTTATCG TCTTGGCGGCGTGACGCCTGATGGTGAGCGGCTTATTTCTCAGGAATGGATCAGCCAGTCCTGGCAGCAGCGCACCAATT CCGTCTTCAACGGCGATGGTTACGGCTATTGCTGGTTCATCAAGGAAATGGCGGGGGAGACGGTCTATTACGCCTGGGGT TACGGCGGGCAGATGCTCTATATCGTGCCCGCCAGACGGCTTTCAGTGGTCATGACCTCGCGCGAGGATGCGCCTTCGGC CAGAACCGGTTATCGCGACCAGCTGCATGGTCTCATGGAAGACATCATCCGTGCGGTGTGA
Upstream 100 bases:
>100_bases CCGGAGTAAGCTGTCGCAGAGTGGGGTGGGGAGTTAATTAACCGTCCCGTCGCGCGGTGGCTGCAGCTTACTGATCAAGG TCGGAAAACGCTCACCCGTC
Downstream 100 bases:
>100_bases GGCAGGCGATGACGCTCAGAGCGGACGGTTGATGCTCTGGAACGCTTCGCCGAGGCGCTTCATGCGTTCCTCATAGGCCC CCGTCAGGCAGGCGACATCG
Product: hypothetical protein
Products: NA
Alternate protein names: 6-Aminohexanoate-Dimer Hydrolase; Beta-Lactamase Family Protein; Beta-Lactamase Class C; Exported 6-Aminohexanoate-Dimer Hydrolase Protein; Secreted Beta-Lactamase Family Protein; Beta-Lactamase Class C Protein; Beta-Lactamase-Like Hydrolase
Number of amino acids: Translated: 446; Mature: 446
Protein sequence:
>446_residues MLGLVPSICNQSMLCDVDARDRPEHDVERDVRFTVVRSAALWAAFCCPNQMTHLGSQTDSSASQADSLTPFNILFSHNKC EIAGSPSATQQSHWSDVRPATLFQNAAMPNFITMKRRTALTLIASLPFAPLARAQSAGNNIRFDPLLTQADALSSLKAVI VSIDGEEVASRAYHGASLNGSTNIKSASKSVISALVGMAIDRKIIEGADQPIATILRGDFPPNPDPRLERITVGNLLSMQ SGLERMSGPNYGRWVASRNWVRMALGSGFAGEPGGGMLYSTASTHLLSAILTKASGRSTLSLARDWFRPLEGFSIGGWER DPQGIYLGGNQMAMTARSLLAFGELYRLGGVTPDGERLISQEWISQSWQQRTNSVFNGDGYGYCWFIKEMAGETVYYAWG YGGQMLYIVPARRLSVVMTSREDAPSARTGYRDQLHGLMEDIIRAV
Sequences:
>Translated_446_residues MLGLVPSICNQSMLCDVDARDRPEHDVERDVRFTVVRSAALWAAFCCPNQMTHLGSQTDSSASQADSLTPFNILFSHNKC EIAGSPSATQQSHWSDVRPATLFQNAAMPNFITMKRRTALTLIASLPFAPLARAQSAGNNIRFDPLLTQADALSSLKAVI VSIDGEEVASRAYHGASLNGSTNIKSASKSVISALVGMAIDRKIIEGADQPIATILRGDFPPNPDPRLERITVGNLLSMQ SGLERMSGPNYGRWVASRNWVRMALGSGFAGEPGGGMLYSTASTHLLSAILTKASGRSTLSLARDWFRPLEGFSIGGWER DPQGIYLGGNQMAMTARSLLAFGELYRLGGVTPDGERLISQEWISQSWQQRTNSVFNGDGYGYCWFIKEMAGETVYYAWG YGGQMLYIVPARRLSVVMTSREDAPSARTGYRDQLHGLMEDIIRAV >Mature_446_residues MLGLVPSICNQSMLCDVDARDRPEHDVERDVRFTVVRSAALWAAFCCPNQMTHLGSQTDSSASQADSLTPFNILFSHNKC EIAGSPSATQQSHWSDVRPATLFQNAAMPNFITMKRRTALTLIASLPFAPLARAQSAGNNIRFDPLLTQADALSSLKAVI VSIDGEEVASRAYHGASLNGSTNIKSASKSVISALVGMAIDRKIIEGADQPIATILRGDFPPNPDPRLERITVGNLLSMQ SGLERMSGPNYGRWVASRNWVRMALGSGFAGEPGGGMLYSTASTHLLSAILTKASGRSTLSLARDWFRPLEGFSIGGWER DPQGIYLGGNQMAMTARSLLAFGELYRLGGVTPDGERLISQEWISQSWQQRTNSVFNGDGYGYCWFIKEMAGETVYYAWG YGGQMLYIVPARRLSVVMTSREDAPSARTGYRDQLHGLMEDIIRAV
Specific function: Unknown
COG id: COG1680
COG function: function code V; Beta-lactamase class C and other penicillin binding proteins
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48645; Mature: 48645
Theoretical pI: Translated: 7.84; Mature: 7.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 4.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.6 %Met (Mature Protein) 4.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLGLVPSICNQSMLCDVDARDRPEHDVERDVRFTVVRSAALWAAFCCPNQMTHLGSQTDS CCCCCHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC SASQADSLTPFNILFSHNKCEIAGSPSATQQSHWSDVRPATLFQNAAMPNFITMKRRTAL CHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHH TLIASLPFAPLARAQSAGNNIRFDPLLTQADALSSLKAVIVSIDGEEVASRAYHGASLNG HHHHHCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCC STNIKSASKSVISALVGMAIDRKIIEGADQPIATILRGDFPPNPDPRLERITVGNLLSMQ CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCEEEEEHHHHHHHH SGLERMSGPNYGRWVASRNWVRMALGSGFAGEPGGGMLYSTASTHLLSAILTKASGRSTL HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHH SLARDWFRPLEGFSIGGWERDPQGIYLGGNQMAMTARSLLAFGELYRLGGVTPDGERLIS HHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH QEWISQSWQQRTNSVFNGDGYGYCWFIKEMAGETVYYAWGYGGQMLYIVPARRLSVVMTS HHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCEEEEEECCCCEEEEEECCCEEEEEEEC REDAPSARTGYRDQLHGLMEDIIRAV CCCCCCCCCCCHHHHHHHHHHHHHHC >Mature Secondary Structure MLGLVPSICNQSMLCDVDARDRPEHDVERDVRFTVVRSAALWAAFCCPNQMTHLGSQTDS CCCCCHHHHCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC SASQADSLTPFNILFSHNKCEIAGSPSATQQSHWSDVRPATLFQNAAMPNFITMKRRTAL CHHHHCCCCCEEEEEECCEEEECCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHH TLIASLPFAPLARAQSAGNNIRFDPLLTQADALSSLKAVIVSIDGEEVASRAYHGASLNG HHHHHCCCHHHHHHHHCCCCEEECHHHHHHHHHHHHEEEEEECCHHHHHHHHHCCCCCCC STNIKSASKSVISALVGMAIDRKIIEGADQPIATILRGDFPPNPDPRLERITVGNLLSMQ CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCEEEEEHHHHHHHH SGLERMSGPNYGRWVASRNWVRMALGSGFAGEPGGGMLYSTASTHLLSAILTKASGRSTL HHHHHHCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHCCCCHHH SLARDWFRPLEGFSIGGWERDPQGIYLGGNQMAMTARSLLAFGELYRLGGVTPDGERLIS HHHHHHHHHHCCCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHH QEWISQSWQQRTNSVFNGDGYGYCWFIKEMAGETVYYAWGYGGQMLYIVPARRLSVVMTS HHHHHHHHHHHHCCCCCCCCCEEEEEEHHHHCCEEEEEECCCCEEEEEECCCEEEEEEEC REDAPSARTGYRDQLHGLMEDIIRAV CCCCCCCCCCCHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA