Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15889129
Identifier: 15889129
GI number: 15889129
Start: 1806158
End: 1806835
Strand: Direct
Name: 15889129
Synonym: Atu1826
Alternate gene names: NA
Gene position: 1806158-1806835 (Clockwise)
Preceding gene: 159184932
Following gene: 159184939
Centisome position: 63.56
GC content: 59.59
Gene sequence:
>678_bases ATGCCCGAAGTCATTTTTAACGGCCCTGCGGGTCGCCTCGAAGGCCGTTATCAACCCTCCAAGGAAAAGAGCGCGCCGAT AGCGATCATTCTTCATCCGCACCCGCAGTTTGGCGGGACGATGAACAACCAGATCGTCTACCAGCTCTTCTATCTTTTCC AGAAGCGCGGTTTCACGACGCTCCGGTTCAACTTCCGCTCCATCGGCCGTAGCCAGGGCGAGTTCGACCATGGCGCCGGC GAGCTTTCCGACGCTGCTTCCGCTCTCGACTGGGTGCAGAGCCTGCATCCCGATTCGAAAAGCTGCTGGGTCGCCGGTTA TTCCTTCGGCGCCTGGATCGGCATGCAGCTGCTGATGCGCCGTCCGGAAATCGAAGGCTTCATGTCGATTGCGCCGCAGC CCAATACCTACGACTTCTCCTTCCTCGCCCCCTGCCCGTCTTCCGGCCTCATCATCAACGGCGATGCCGACAAGGTTGCG CCTGAGAAGGACGTGAATGGTCTCGTTGAAAAGCTGAAGACCCAGAAAGGCATCCTCATCACCCACCGCACCCTTCCCGG CGCCAACCACTTCTTCAACGGCAAGGTGGATGAGCTGATGGGCGAGTGCGAGGACTATCTCGACCGTCGCCTGAATGGTG AGCTTGTGCCGGAACCGGCGGCGAAGCGTATTCGGTGA
Upstream 100 bases:
>100_bases AATTATTCTAAACTGCGTTCTAGAAAAGATGACACAGTTCGTCAAGTCTTCTCATCGGAAGAATGCGGTTCGGGAATGAA AAAACACGACCGGAGTACCA
Downstream 100 bases:
>100_bases TTGGCGGCCCGGCATCTGGGCAGGCTTGATATCCCTTCGATAGCTCCGGCGGTGTGGTTTACCCCCCTCTGCCCTGCCGG GCATCTCCCCCACAGGTGGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 225; Mature: 224
Protein sequence:
>225_residues MPEVIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEFDHGAG ELSDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMRRPEIEGFMSIAPQPNTYDFSFLAPCPSSGLIINGDADKVA PEKDVNGLVEKLKTQKGILITHRTLPGANHFFNGKVDELMGECEDYLDRRLNGELVPEPAAKRIR
Sequences:
>Translated_225_residues MPEVIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEFDHGAG ELSDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMRRPEIEGFMSIAPQPNTYDFSFLAPCPSSGLIINGDADKVA PEKDVNGLVEKLKTQKGILITHRTLPGANHFFNGKVDELMGECEDYLDRRLNGELVPEPAAKRIR >Mature_224_residues PEVIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEFDHGAGE LSDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMRRPEIEGFMSIAPQPNTYDFSFLAPCPSSGLIINGDADKVAP EKDVNGLVEKLKTQKGILITHRTLPGANHFFNGKVDELMGECEDYLDRRLNGELVPEPAAKRIR
Specific function: Unknown
COG id: COG2945
COG function: function code R; Predicted hydrolase of the alpha/beta superfamily
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000383 [H]
Pfam domain/function: PF02129 Peptidase_S15 [H]
EC number: NA
Molecular weight: Translated: 25085; Mature: 24954
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPEVIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTT CCCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEE LRFNFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMR EEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH RPEIEGFMSIAPQPNTYDFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILI CCCCCHHEEECCCCCCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEE THRTLPGANHFFNGKVDELMGECEDYLDRRLNGELVPEPAAKRIR EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC >Mature Secondary Structure PEVIFNGPAGRLEGRYQPSKEKSAPIAIILHPHPQFGGTMNNQIVYQLFYLFQKRGFTT CCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEE LRFNFRSIGRSQGEFDHGAGELSDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMR EEEEHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHHHHHHH RPEIEGFMSIAPQPNTYDFSFLAPCPSSGLIINGDADKVAPEKDVNGLVEKLKTQKGILI CCCCCHHEEECCCCCCCCEEEECCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHCCCEEE THRTLPGANHFFNGKVDELMGECEDYLDRRLNGELVPEPAAKRIR EEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9823893 [H]