Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888998
Identifier: 15888998
GI number: 15888998
Start: 1676898
End: 1677506
Strand: Reverse
Name: 15888998
Synonym: Atu1692
Alternate gene names: NA
Gene position: 1677506-1676898 (Counterclockwise)
Preceding gene: 15888999
Following gene: 15888987
Centisome position: 59.03
GC content: 62.4
Gene sequence:
>609_bases ATGACGATCATTCGCACGGTTGAGGAACTGAAGGCCATTTATGACGGCACGAGCGAAGCCTCGGTCGCCAAGGTGACGGC CACGTTGACGGCGGAATACCGGCAGATGATCGAGGCCTCGCCCTTCCTCGCGCTGGCGACGGTGGGGCCTGAGGGCATGG ACTGTTCGCCGCGCGGCGACAAGGGTGGCGTGGTGCGGGTGGCCGATGACAGGACCGTGCTGTTGCCAGACTGGCGCGGC AACAACCGCGTCGATTCGCTTCTGAACATCGTGCGTGATCCGCGGGTGGCGCTGATGTTCCTGATCCCCGGTTCGAATAC GACCATGCGCATCAATGGCCGCGCCGTGGTTTCCGTCGAAGCCGAGTTGCTGCAGAGCTTCGAGATGGATGGCAAACATC CGCGCACCGTCATCGTGGTGACGATTGACGAGGTCTATTTCCAGTGTGCACGGGCGTTGATGCGCTCGGAACTGTGGAAC CCCGCCAATTTCGTCGACCCTGCCTCGCTTCCGACACCCGGCCTGCTGCTCAAGGCGGCGAAGGCGGAGTTCGATCAGGA GACTTATGATCGGGAATGGGCGGTTCGGGCGGCGAAGACCATGTGGTGA
Upstream 100 bases:
>100_bases CACCGCGCGCGAGCGGGCGGAGCGGGAAAAGGCGGAAGCGGAAGAATAAGGGATTGCGCCTTTCGGCGGCGCAGGGTGAT TTCGAGGGATTGGAACTGAC
Downstream 100 bases:
>100_bases GGCATCAATTGCCGCAGCAACGGGTTGGCACTTAAAGGGCATGCACTTGTGTCACCCCGCCCAAGAACTTGGTCTGGCTG GATTCCTGTGACGATCACAG
Product: hypothetical protein
Products: NA
Alternate protein names: Phosphohydrolase; Pyridoxamine 5-Phosphate Oxidase; Pyridoxamine 5-Phosphate Oxidase-Like Protein; Pyridoxamine 5-Phosphate Oxidase-Related Protein; NTP Pyrophosphohydrolase; Pyridoxine Biosynthesis Protein; Phenylacetate-CoA Oxygenase/Reductase PaaK Subunit; Transcriptional Regulator AraC Family; Pyridoxamine 5-Phosphate Oxidase Family; Fmn Flavoprotein; Pyridoxamine 5\-Phosphate Oxidase Family Protein; Ferredoxin; Pyridoxamine 5-Phosphate Oxidase-Related
Number of amino acids: Translated: 202; Mature: 201
Protein sequence:
>202_residues MTIIRTVEELKAIYDGTSEASVAKVTATLTAEYRQMIEASPFLALATVGPEGMDCSPRGDKGGVVRVADDRTVLLPDWRG NNRVDSLLNIVRDPRVALMFLIPGSNTTMRINGRAVVSVEAELLQSFEMDGKHPRTVIVVTIDEVYFQCARALMRSELWN PANFVDPASLPTPGLLLKAAKAEFDQETYDREWAVRAAKTMW
Sequences:
>Translated_202_residues MTIIRTVEELKAIYDGTSEASVAKVTATLTAEYRQMIEASPFLALATVGPEGMDCSPRGDKGGVVRVADDRTVLLPDWRG NNRVDSLLNIVRDPRVALMFLIPGSNTTMRINGRAVVSVEAELLQSFEMDGKHPRTVIVVTIDEVYFQCARALMRSELWN PANFVDPASLPTPGLLLKAAKAEFDQETYDREWAVRAAKTMW >Mature_201_residues TIIRTVEELKAIYDGTSEASVAKVTATLTAEYRQMIEASPFLALATVGPEGMDCSPRGDKGGVVRVADDRTVLLPDWRGN NRVDSLLNIVRDPRVALMFLIPGSNTTMRINGRAVVSVEAELLQSFEMDGKHPRTVIVVTIDEVYFQCARALMRSELWNP ANFVDPASLPTPGLLLKAAKAEFDQETYDREWAVRAAKTMW
Specific function: Unknown
COG id: COG3576
COG function: function code R; Predicted flavin-nucleotide-binding protein structurally related to pyridoxine 5'-phosphate oxidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22388; Mature: 22257
Theoretical pI: Translated: 4.92; Mature: 4.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTIIRTVEELKAIYDGTSEASVAKVTATLTAEYRQMIEASPFLALATVGPEGMDCSPRGD CCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC KGGVVRVADDRTVLLPDWRGNNRVDSLLNIVRDPRVALMFLIPGSNTTMRINGRAVVSVE CCCEEEEECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEECCEEEEEEH AELLQSFEMDGKHPRTVIVVTIDEVYFQCARALMRSELWNPANFVDPASLPTPGLLLKAA HHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH KAEFDQETYDREWAVRAAKTMW HHHCCHHHHHHHHHHHHHHHCC >Mature Secondary Structure TIIRTVEELKAIYDGTSEASVAKVTATLTAEYRQMIEASPFLALATVGPEGMDCSPRGD CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCC KGGVVRVADDRTVLLPDWRGNNRVDSLLNIVRDPRVALMFLIPGSNTTMRINGRAVVSVE CCCEEEEECCCEEEECCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCEEEECCEEEEEEH AELLQSFEMDGKHPRTVIVVTIDEVYFQCARALMRSELWNPANFVDPASLPTPGLLLKAA HHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH KAEFDQETYDREWAVRAAKTMW HHHCCHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA