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The map label for this gene is ymdC [H]

Identifier: 15888942

GI number: 15888942

Start: 1615171

End: 1616727

Strand: Direct

Name: ymdC [H]

Synonym: Atu1630

Alternate gene names: 15888942

Gene position: 1615171-1616727 (Clockwise)

Preceding gene: 15888939

Following gene: 159184848

Centisome position: 56.84

GC content: 60.12

Gene sequence:

>1557_bases
GTGACTGCATTTACGGTCTTCATCATCATTCTTCTCATGCTCATTGGGCCGAGCCTGTTCGTCGTCATCGGCAAACAGCG
GGAAAAAGCCATTCCCAAACGCCCCTCCACCGCTCTGCCGGTTACCGAAGACGAAACGGCGCTGGACCGGCACTGGCAAT
CGATCAGAAACGGCTGGAACGAGAAGAATGCACTCTGCCTCTTACATTCCAACCTCGATGCCTTTGCCGTGCGTGTGGCG
GCGGCGCGGGCCGCCGGGCGCAGCCTCGATCTCATGTATTACATGTGGAATGCCGACCTGACCGGGCGGCTGATGATGCG
CGAGGTCATCGCCGCCGCTGATCGCGGCGTGCGGGTGCGGCTGCTGCTCGATGATCTCGGCGTCTCCATGTCAGACCGCA
TCTTCCATGCCATCGACAGCCACCCCAATATCGAACTCCGCCTGTTCAATCCCACCCGGGCACGGGAAAACATCCTGCAT
CGCAGCCTCGAACTGGTGCTGCGCTTTCGAAGCGTCAACCGGCGCATGCACAACAAGGCATGGATTGCCGATGGCCGCGC
CGTGATCGTCGGCGGCCGAAATATTGGCGACGCTTACTTCGACGCCGCCGAACGGGCAAATTTCCACGATTTCGACATTC
TCGGTTTCGGCGGGATCGTTGCCGACGCCACCGAAATCTTCGACGATTACTGGAACAGCGCCGTTTCCGTGCCAGTACGC
TCGCTGCTGGCGCGCCGACCGAACAAACTTGCCAAACTGCGGCGCGAACTGGACGCCCTGCCGCAAAGCGAAGCCGCGAG
ACCCTATCTGGAGCGGGTGGAGAGCCAATATGGTCGTGATCATTTCCTGATGTCGGACCGCCTGCACTGGGTCGATACGG
CAGATGTGCTTGCCGATCCGCCCGAAAAAGCGGCGGGAAAACGCCGCAAGGGCCATAATTTCCTGATGGAAAGCCTATTG
CCGCTGATGCAGGCGGCGGGAGAGAGCCTGCACATTACTTCTCCCTATTTCATTCCCGGTAAACAGGGTGTGGAGATTTT
TCTCGATCTCGCCGAACGCGGCGTGTCGCTCGCCATCCTCACCAATTCACTGGCCGCAACCGATGTCGCCGCCGTTCACG
CCGGTTATGCGCGTTACCGGAAACCGCTTCTCTCCGGCGGGGTACGTTTGCATGAATTGCGTTCGCAGGCGGATCAGGGC
AGCTTCACCCTGCGCGGTTCGGGACAGGCAAGCCTGCACACCAAGGCCTTCACCCGCGATGGCGAGACCGGCTATATCGG
CTCACTCAATTTCGATCCCCGCTCCGCCTCGCTCAATACGGAAATGGGCGTGGTGTTCAATTCAGCCCCGCTGGTGGCCC
GCATGGACGAGATATTCGCCGAAGAAATCCGCCGCACGATGAGCTTCGAACTTGATATCGACAGCGCCAACCGTATCGTC
TGGATGACGGAAGAACGGGGGCAGCCAAAGATCTACCGGCGCGAACCCGACGCGGCGATCAGCCGCCGGATCATCGCCGG
CATCATGCGTGTCCTGCCGCTTGAATCTCAGCTTTGA

Upstream 100 bases:

>100_bases
GCTTTTTTCGTCACGCCAGCATCTGCTGTGGTGAACGCTTTATCTCCTCGCGCGTTTGTATTCCGCCTGATAATCTTCAG
GCCGGGAGCGACAAACAACA

Downstream 100 bases:

>100_bases
CGGGAAAACCCGGCTCAGGCCGCCGGCCTTATCCCCGCTTTTGCCAGCTGTATCTGCACCAGCGTATCGAGGTTCTGGTT
GACGCGGCAATAAAATTCCT

Product: phospholipase D family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 518; Mature: 517

Protein sequence:

>518_residues
MTAFTVFIIILLMLIGPSLFVVIGKQREKAIPKRPSTALPVTEDETALDRHWQSIRNGWNEKNALCLLHSNLDAFAVRVA
AARAAGRSLDLMYYMWNADLTGRLMMREVIAAADRGVRVRLLLDDLGVSMSDRIFHAIDSHPNIELRLFNPTRARENILH
RSLELVLRFRSVNRRMHNKAWIADGRAVIVGGRNIGDAYFDAAERANFHDFDILGFGGIVADATEIFDDYWNSAVSVPVR
SLLARRPNKLAKLRRELDALPQSEAARPYLERVESQYGRDHFLMSDRLHWVDTADVLADPPEKAAGKRRKGHNFLMESLL
PLMQAAGESLHITSPYFIPGKQGVEIFLDLAERGVSLAILTNSLAATDVAAVHAGYARYRKPLLSGGVRLHELRSQADQG
SFTLRGSGQASLHTKAFTRDGETGYIGSLNFDPRSASLNTEMGVVFNSAPLVARMDEIFAEEIRRTMSFELDIDSANRIV
WMTEERGQPKIYRREPDAAISRRIIAGIMRVLPLESQL

Sequences:

>Translated_518_residues
MTAFTVFIIILLMLIGPSLFVVIGKQREKAIPKRPSTALPVTEDETALDRHWQSIRNGWNEKNALCLLHSNLDAFAVRVA
AARAAGRSLDLMYYMWNADLTGRLMMREVIAAADRGVRVRLLLDDLGVSMSDRIFHAIDSHPNIELRLFNPTRARENILH
RSLELVLRFRSVNRRMHNKAWIADGRAVIVGGRNIGDAYFDAAERANFHDFDILGFGGIVADATEIFDDYWNSAVSVPVR
SLLARRPNKLAKLRRELDALPQSEAARPYLERVESQYGRDHFLMSDRLHWVDTADVLADPPEKAAGKRRKGHNFLMESLL
PLMQAAGESLHITSPYFIPGKQGVEIFLDLAERGVSLAILTNSLAATDVAAVHAGYARYRKPLLSGGVRLHELRSQADQG
SFTLRGSGQASLHTKAFTRDGETGYIGSLNFDPRSASLNTEMGVVFNSAPLVARMDEIFAEEIRRTMSFELDIDSANRIV
WMTEERGQPKIYRREPDAAISRRIIAGIMRVLPLESQL
>Mature_517_residues
TAFTVFIIILLMLIGPSLFVVIGKQREKAIPKRPSTALPVTEDETALDRHWQSIRNGWNEKNALCLLHSNLDAFAVRVAA
ARAAGRSLDLMYYMWNADLTGRLMMREVIAAADRGVRVRLLLDDLGVSMSDRIFHAIDSHPNIELRLFNPTRARENILHR
SLELVLRFRSVNRRMHNKAWIADGRAVIVGGRNIGDAYFDAAERANFHDFDILGFGGIVADATEIFDDYWNSAVSVPVRS
LLARRPNKLAKLRRELDALPQSEAARPYLERVESQYGRDHFLMSDRLHWVDTADVLADPPEKAAGKRRKGHNFLMESLLP
LMQAAGESLHITSPYFIPGKQGVEIFLDLAERGVSLAILTNSLAATDVAAVHAGYARYRKPLLSGGVRLHELRSQADQGS
FTLRGSGQASLHTKAFTRDGETGYIGSLNFDPRSASLNTEMGVVFNSAPLVARMDEIFAEEIRRTMSFELDIDSANRIVW
MTEERGQPKIYRREPDAAISRRIIAGIMRVLPLESQL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=460, Percent_Identity=41.5217391304348, Blast_Score=313, Evalue=2e-86,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 58096; Mature: 57965

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAFTVFIIILLMLIGPSLFVVIGKQREKAIPKRPSTALPVTEDETALDRHWQSIRNGWN
CHHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
EKNALCLLHSNLDAFAVRVAAARAAGRSLDLMYYMWNADLTGRLMMREVIAAADRGVRVR
CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
LLLDDLGVSMSDRIFHAIDSHPNIELRLFNPTRARENILHRSLELVLRFRSVNRRMHNKA
EEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
WIADGRAVIVGGRNIGDAYFDAAERANFHDFDILGFGGIVADATEIFDDYWNSAVSVPVR
EEECCCEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHH
SLLARRPNKLAKLRRELDALPQSEAARPYLERVESQYGRDHFLMSDRLHWVDTADVLADP
HHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCEECCHHHHCCC
PEKAAGKRRKGHNFLMESLLPLMQAAGESLHITSPYFIPGKQGVEIFLDLAERGVSLAIL
CHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCHHHHHHHHHCCCEEEEE
TNSLAATDVAAVHAGYARYRKPLLSGGVRLHELRSQADQGSFTLRGSGQASLHTKAFTRD
ECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCEEHHHCCCC
GETGYIGSLNFDPRSASLNTEMGVVFNSAPLVARMDEIFAEEIRRTMSFELDIDSANRIV
CCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEE
WMTEERGQPKIYRREPDAAISRRIIAGIMRVLPLESQL
EEECCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
TAFTVFIIILLMLIGPSLFVVIGKQREKAIPKRPSTALPVTEDETALDRHWQSIRNGWN
HHHHHHHHHHHHHHCCCEEEEECCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
EKNALCLLHSNLDAFAVRVAAARAAGRSLDLMYYMWNADLTGRLMMREVIAAADRGVRVR
CCCEEEEEECCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHCCCCCEEE
LLLDDLGVSMSDRIFHAIDSHPNIELRLFNPTRARENILHRSLELVLRFRSVNRRMHNKA
EEEECCCCCHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCE
WIADGRAVIVGGRNIGDAYFDAAERANFHDFDILGFGGIVADATEIFDDYWNSAVSVPVR
EEECCCEEEECCCCCCHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHHHCCHHHHHHH
SLLARRPNKLAKLRRELDALPQSEAARPYLERVESQYGRDHFLMSDRLHWVDTADVLADP
HHHHHCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCEEECCCCCEECCHHHHCCC
PEKAAGKRRKGHNFLMESLLPLMQAAGESLHITSPYFIPGKQGVEIFLDLAERGVSLAIL
CHHHHCCCCCCHHHHHHHHHHHHHHCCCEEEECCCEECCCCCCHHHHHHHHHCCCEEEEE
TNSLAATDVAAVHAGYARYRKPLLSGGVRLHELRSQADQGSFTLRGSGQASLHTKAFTRD
ECCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCEEEECCCCCCEEHHHCCCC
GETGYIGSLNFDPRSASLNTEMGVVFNSAPLVARMDEIFAEEIRRTMSFELDIDSANRIV
CCCCEEECCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHEEEEEECCCCEEE
WMTEERGQPKIYRREPDAAISRRIIAGIMRVLPLESQL
EEECCCCCCCCEECCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]