Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15888941
Identifier: 15888941
GI number: 15888941
Start: 1614348
End: 1614704
Strand: Reverse
Name: 15888941
Synonym: Atu1628
Alternate gene names: NA
Gene position: 1614704-1614348 (Counterclockwise)
Preceding gene: 159184845
Following gene: 15888940
Centisome position: 56.82
GC content: 60.5
Gene sequence:
>357_bases ATGAACAGGCAGATACCCAAAGTGCCGGATGCCATCGAGCTTGAATATGATCTGGACGAGCCGCCGCAGAAGGTGTGGCG GGCGATCAGCATTCCCGCCTTTCGGGAACACTGGTTGCCGAAGGAAGCCTTGGCGCAGCCCGAAGCGATCAAGGTCTCGC CTGGACGGGAAGTCTGCTACAGGCTGCGGGAGGACACACCGCCATTCCTGGAAAGCACCGTGACGTTCCAGATCGCGTCG AATGACCGTGGCGGCACCAGTCTGCGTATTATTCACGACCTGCCCGCCATCAAGTCCGGCCGGATGACGAAGGCTGCTGC AAACCACAACGGTTCGCCGATCAAGCTCGCGGCCTGA
Upstream 100 bases:
>100_bases CGGACGGGCTGACGCGTATCGCGGCATGGCTCGGCAAATATCGCGCCTACTGGCCGCAGCGTATCGACGCACTCAAGCTC TTGCTGAAGGATATGGATCA
Downstream 100 bases:
>100_bases TCCGGCACGTTTCCCAACATTTTCAAACGACAGGAGTTCGCCGATGCGCGAAACGATGCAACTCGTCCCTATGGTAGTCG AACAATCCTCAAGGGGAGAA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 118; Mature: 118
Protein sequence:
>118_residues MNRQIPKVPDAIELEYDLDEPPQKVWRAISIPAFREHWLPKEALAQPEAIKVSPGREVCYRLREDTPPFLESTVTFQIAS NDRGGTSLRIIHDLPAIKSGRMTKAAANHNGSPIKLAA
Sequences:
>Translated_118_residues MNRQIPKVPDAIELEYDLDEPPQKVWRAISIPAFREHWLPKEALAQPEAIKVSPGREVCYRLREDTPPFLESTVTFQIAS NDRGGTSLRIIHDLPAIKSGRMTKAAANHNGSPIKLAA >Mature_118_residues MNRQIPKVPDAIELEYDLDEPPQKVWRAISIPAFREHWLPKEALAQPEAIKVSPGREVCYRLREDTPPFLESTVTFQIAS NDRGGTSLRIIHDLPAIKSGRMTKAAANHNGSPIKLAA
Specific function: Unknown
COG id: COG3832
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 13195; Mature: 13195
Theoretical pI: Translated: 8.50; Mature: 8.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRQIPKVPDAIELEYDLDEPPQKVWRAISIPAFREHWLPKEALAQPEAIKVSPGREVCY CCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHCCCHHHHCCCCEEEECCCHHHHH RLREDTPPFLESTVTFQIASNDRGGTSLRIIHDLPAIKSGRMTKAAANHNGSPIKLAA HHHCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEEEC >Mature Secondary Structure MNRQIPKVPDAIELEYDLDEPPQKVWRAISIPAFREHWLPKEALAQPEAIKVSPGREVCY CCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCHHHHHCCCHHHHCCCCEEEECCCHHHHH RLREDTPPFLESTVTFQIASNDRGGTSLRIIHDLPAIKSGRMTKAAANHNGSPIKLAA HHHCCCCCCCCCEEEEEEECCCCCCCEEEEEECCCCCCCCCCEEECCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA