Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
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Accession | NC_003062 |
Length | 2,841,580 |
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The map label for this gene is 15888916
Identifier: 15888916
GI number: 15888916
Start: 1584728
End: 1585255
Strand: Reverse
Name: 15888916
Synonym: Atu8159
Alternate gene names: NA
Gene position: 1585255-1584728 (Counterclockwise)
Preceding gene: 15888923
Following gene: 159184833
Centisome position: 55.79
GC content: 60.23
Gene sequence:
>528_bases ATGAAAACGAATACAAGTTCCACCAGCAAGGGGAGGCTCGTAAAGCGCCGAACCGCAGTCGAATTCGATATCGGAAGATA TCCTTACAGGCGGAACATGACGATGGGCAAGCAGATGGGCACATTCGGAACATATGCGGAAAATGCCGCGAGAATCGCTG TGCTTTCGCTATCCTGCGCCATGCTCGCCACCACGCTTGCGGCCTGCAAAGCCCCGGAGCCGATCGTCGCACCCGCCCAT ATGCGCCGCCCAACGACCGAAATCGTTGGCCCGCGCCCCGTCAGCGACAACGCAGTGAGCCAGAAGCGCGATACGGGCAC CTATCCGACCTTTTCCCAGCCGCTGACGGCCGCAGGCAGCCAGATGGGCGATGACGAGGCCTCCAAGATGGAAAAAAGCC TTTCGAACCTTGGTGCGGCACGGCGCAACGGCCAGATTTCGGAAGCCGAATATAAGCGCCGGGTGGCCGAATTGCGGGCG CTCGTCGAAAACCAGAAGCCGGTTGCGACGCCTGCTGCTTCGCAGTGA
Upstream 100 bases:
>100_bases CTGGCGTCGAAGCCGGGCGTTTTGCCACCCTTTTTCCCAGCCCCGCCGTCAACACCTGCCATGCACGATCCTCCACCAAA TTTGTGTTTGCACATTCTGC
Downstream 100 bases:
>100_bases GATTTGACTGCGCATTTTGAACGGTTCCCGGGACTGCTCCTTGCCGTCCTCCAATACCCAAAACGGACCCTTTGTCATGA GCAAGGGGCTGCATATGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 175; Mature: 175
Protein sequence:
>175_residues MKTNTSSTSKGRLVKRRTAVEFDIGRYPYRRNMTMGKQMGTFGTYAENAARIAVLSLSCAMLATTLAACKAPEPIVAPAH MRRPTTEIVGPRPVSDNAVSQKRDTGTYPTFSQPLTAAGSQMGDDEASKMEKSLSNLGAARRNGQISEAEYKRRVAELRA LVENQKPVATPAASQ
Sequences:
>Translated_175_residues MKTNTSSTSKGRLVKRRTAVEFDIGRYPYRRNMTMGKQMGTFGTYAENAARIAVLSLSCAMLATTLAACKAPEPIVAPAH MRRPTTEIVGPRPVSDNAVSQKRDTGTYPTFSQPLTAAGSQMGDDEASKMEKSLSNLGAARRNGQISEAEYKRRVAELRA LVENQKPVATPAASQ >Mature_175_residues MKTNTSSTSKGRLVKRRTAVEFDIGRYPYRRNMTMGKQMGTFGTYAENAARIAVLSLSCAMLATTLAACKAPEPIVAPAH MRRPTTEIVGPRPVSDNAVSQKRDTGTYPTFSQPLTAAGSQMGDDEASKMEKSLSNLGAARRNGQISEAEYKRRVAELRA LVENQKPVATPAASQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18939; Mature: 18939
Theoretical pI: Translated: 10.62; Mature: 10.62
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 4.6 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 4.6 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKTNTSSTSKGRLVKRRTAVEFDIGRYPYRRNMTMGKQMGTFGTYAENAARIAVLSLSCA CCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCHHHHHCCCCHHHHCCHHHHHHHHHHH MLATTLAACKAPEPIVAPAHMRRPTTEIVGPRPVSDNAVSQKRDTGTYPTFSQPLTAAGS HHHHHHHHHCCCCCCCCCHHHCCCCHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHCC QMGDDEASKMEKSLSNLGAARRNGQISEAEYKRRVAELRALVENQKPVATPAASQ CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKTNTSSTSKGRLVKRRTAVEFDIGRYPYRRNMTMGKQMGTFGTYAENAARIAVLSLSCA CCCCCCCCCCCHHHHHHHHHEECCCCCCCCCCCCHHHHHCCCCHHHHCCHHHHHHHHHHH MLATTLAACKAPEPIVAPAHMRRPTTEIVGPRPVSDNAVSQKRDTGTYPTFSQPLTAAGS HHHHHHHHHCCCCCCCCCHHHCCCCHHCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHCC QMGDDEASKMEKSLSNLGAARRNGQISEAEYKRRVAELRALVENQKPVATPAASQ CCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA