Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15888696
Identifier: 15888696
GI number: 15888696
Start: 1364449
End: 1365648
Strand: Reverse
Name: 15888696
Synonym: Atu1370
Alternate gene names: NA
Gene position: 1365648-1364449 (Counterclockwise)
Preceding gene: 159184734
Following gene: 15888695
Centisome position: 48.06
GC content: 57.25
Gene sequence:
>1200_bases ATGACAGAAGATTATTCAATACGCGTTGCGCAATCCTTCACGGATATCGATCCGGAAAGCTGGAACCAGCTTTCCGGAGT TTCGCGCAATACGTCAGAAAAATACTACAACCCCTTTATTTCTCATGCGTTTTTATCCTCCATGGAGGATTCCGGCTCGG CGACGGCAAAGACCGGCTGGCTTGGCCATCACTTGCTGCTGGAAGATGCCGTGGGAATGCTCGTCGGCGCTGTGCCGGCC TATCTGAAGAACCACAGTCAGGGCGAATATGTCTTCGACCACGGCTGGGCGGACGCTTTTGAACGGGCCGGTGGTCACTA TTATCCAAAACTGCAATGTTCGGTTCCCTTCACGCCTGCGACCGGGCCGAGGCTGCTTGTTTCCGAAGCCGTGGATGCCA CGCGCTTCAAGCCGCTTCTGGCCTCTGGTCTCGCGCAGGTAACGGAAAAGATCGGCGTTTCCTCCGCGCATGTCACGTTT CTGGAAGAGGATGATCTGTCTGCCCTGCTGCCGCGCGATTTCCTGCACAGGAAAGACCAGCAGTTCCACTTCATCAATCA CGGTTATCGCGACCACGATGATTTTCTCGACGCCCTCTCCTCGCGCAAACGCAAGGGGCTGAAAAAGGAACGCCGCGCCG CGCTGGAACATGGCATCGAGATCGACTGGCTGACCGGAAGCGATCTGACCGAAGATATCTGGGACCAGTTCTTCGCCTTC TACATGGATACCGGCAGCCGCAAATGGGGCCGGCCCTATCTGACGCGGAAGTTCTACTCGCTGATCGGCGAGCGCATGGC CGATGATGTGCTGCTGGTGATGGCCAAACGCGAGGGGCGCTACATTGCCGGGGCGATCAATTTCATCGGTTCGGATGCAC TTTATGGCCGCCACTGGGGCTGCATCGAGGATCATCCCTTCCTGCATTTCGAGGTCTGTTATCATCAGGCGATCGATTTC GCGCTGGCGAAGAGATTGAAACGGGTGGAAGCCGGTGCGCAGGGCGAACACAAGCTGGCGCGTGGTTATGTGCCGGTCAC TACCCATTCGGCGCATTTCATCGCCCATCCGGGCCTGCGCCGCGCCATTGCCGATTATCTTCAGCGCGAGCGCGAAGAAG TCGAGCATATCGGCGATTATCTTGATGAACACACGCCCTTCCGCAAGGGCGAGAGACAGGAACACGAACCGGACGCATAG
Upstream 100 bases:
>100_bases GGACGGTAAGGGATGAAAATGCGCGCGCGACTACCTATAAATATGCGGACCAGATGACATTCGAAGGTTTCGACCCGAGA GAGAACCCGTCCGCCACGGC
Downstream 100 bases:
>100_bases TCCGCGACGAGGAGATCACCGATGGCCAGCGCCTATGACGACAACAATATCTTCGCAAAAATCCTGCGCGGCGAAATTCC GAGCCACAAGCTTTATGAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 399; Mature: 398
Protein sequence:
>399_residues MTEDYSIRVAQSFTDIDPESWNQLSGVSRNTSEKYYNPFISHAFLSSMEDSGSATAKTGWLGHHLLLEDAVGMLVGAVPA YLKNHSQGEYVFDHGWADAFERAGGHYYPKLQCSVPFTPATGPRLLVSEAVDATRFKPLLASGLAQVTEKIGVSSAHVTF LEEDDLSALLPRDFLHRKDQQFHFINHGYRDHDDFLDALSSRKRKGLKKERRAALEHGIEIDWLTGSDLTEDIWDQFFAF YMDTGSRKWGRPYLTRKFYSLIGERMADDVLLVMAKREGRYIAGAINFIGSDALYGRHWGCIEDHPFLHFEVCYHQAIDF ALAKRLKRVEAGAQGEHKLARGYVPVTTHSAHFIAHPGLRRAIADYLQREREEVEHIGDYLDEHTPFRKGERQEHEPDA
Sequences:
>Translated_399_residues MTEDYSIRVAQSFTDIDPESWNQLSGVSRNTSEKYYNPFISHAFLSSMEDSGSATAKTGWLGHHLLLEDAVGMLVGAVPA YLKNHSQGEYVFDHGWADAFERAGGHYYPKLQCSVPFTPATGPRLLVSEAVDATRFKPLLASGLAQVTEKIGVSSAHVTF LEEDDLSALLPRDFLHRKDQQFHFINHGYRDHDDFLDALSSRKRKGLKKERRAALEHGIEIDWLTGSDLTEDIWDQFFAF YMDTGSRKWGRPYLTRKFYSLIGERMADDVLLVMAKREGRYIAGAINFIGSDALYGRHWGCIEDHPFLHFEVCYHQAIDF ALAKRLKRVEAGAQGEHKLARGYVPVTTHSAHFIAHPGLRRAIADYLQREREEVEHIGDYLDEHTPFRKGERQEHEPDA >Mature_398_residues TEDYSIRVAQSFTDIDPESWNQLSGVSRNTSEKYYNPFISHAFLSSMEDSGSATAKTGWLGHHLLLEDAVGMLVGAVPAY LKNHSQGEYVFDHGWADAFERAGGHYYPKLQCSVPFTPATGPRLLVSEAVDATRFKPLLASGLAQVTEKIGVSSAHVTFL EEDDLSALLPRDFLHRKDQQFHFINHGYRDHDDFLDALSSRKRKGLKKERRAALEHGIEIDWLTGSDLTEDIWDQFFAFY MDTGSRKWGRPYLTRKFYSLIGERMADDVLLVMAKREGRYIAGAINFIGSDALYGRHWGCIEDHPFLHFEVCYHQAIDFA LAKRLKRVEAGAQGEHKLARGYVPVTTHSAHFIAHPGLRRAIADYLQREREEVEHIGDYLDEHTPFRKGERQEHEPDA
Specific function: Unknown
COG id: COG3146
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45429; Mature: 45298
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTEDYSIRVAQSFTDIDPESWNQLSGVSRNTSEKYYNPFISHAFLSSMEDSGSATAKTGW CCCCCEEEEEHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LGHHLLLEDAVGMLVGAVPAYLKNHSQGEYVFDHGWADAFERAGGHYYPKLQCSVPFTPA CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCCEEEEECCCCCC TGPRLLVSEAVDATRFKPLLASGLAQVTEKIGVSSAHVTFLEEDDLSALLPRDFLHRKDQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHCCCC QFHFINHGYRDHDDFLDALSSRKRKGLKKERRAALEHGIEIDWLTGSDLTEDIWDQFFAF CEEHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH YMDTGSRKWGRPYLTRKFYSLIGERMADDVLLVMAKREGRYIAGAINFIGSDALYGRHWG HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEHHHHHCCCCCCCCCCC CIEDHPFLHFEVCYHQAIDFALAKRLKRVEAGAQGEHKLARGYVPVTTHSAHFIAHPGLR CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEECCCCEEECCCHH RAIADYLQREREEVEHIGDYLDEHTPFRKGERQEHEPDA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC >Mature Secondary Structure TEDYSIRVAQSFTDIDPESWNQLSGVSRNTSEKYYNPFISHAFLSSMEDSGSATAKTGW CCCCEEEEEHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCC LGHHLLLEDAVGMLVGAVPAYLKNHSQGEYVFDHGWADAFERAGGHYYPKLQCSVPFTPA CHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHHCCCCCCCEEEEECCCCCC TGPRLLVSEAVDATRFKPLLASGLAQVTEKIGVSSAHVTFLEEDDLSALLPRDFLHRKDQ CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCHHHHHCCCC QFHFINHGYRDHDDFLDALSSRKRKGLKKERRAALEHGIEIDWLTGSDLTEDIWDQFFAF CEEHHCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH YMDTGSRKWGRPYLTRKFYSLIGERMADDVLLVMAKREGRYIAGAINFIGSDALYGRHWG HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHEEEEECCCCCEEEEHHHHHCCCCCCCCCCC CIEDHPFLHFEVCYHQAIDFALAKRLKRVEAGAQGEHKLARGYVPVTTHSAHFIAHPGLR CCCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCEEEECCCCEEECCCHH RAIADYLQREREEVEHIGDYLDEHTPFRKGERQEHEPDA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA