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The map label for this gene is clpS

Identifier: 15888689

GI number: 15888689

Start: 1357979

End: 1358332

Strand: Direct

Name: clpS

Synonym: Atu1363

Alternate gene names: 15888689

Gene position: 1357979-1358332 (Clockwise)

Preceding gene: 15888688

Following gene: 15888690

Centisome position: 47.79

GC content: 54.24

Gene sequence:

>354_bases
ATGATCGCTAAGCCGATCTACATGCAGGGCGAGGGCGACGGGGAAGACGGCGGCACCAACCGCGGAACGTCTGTTATCAC
CCGCGTTAAGCCGAAAACGAAAAGACCGAATTTGTACCGTGTTCTTTTACTGAATGACGACTACACTCCCATGGAATTCG
TCATCCATATTCTGGAGCGATTTTTCCAGAAGGATCGCGAGGCGGCAACCCGCATCATGCTGCACGTGCACCAGCACGGC
GTGGGCGAATGTGGGGTGTTTACATATGAGGTCGCAGAGACGAAAGTAAGCCAGGTCATGGATTTCGCCCGACAGCACCA
GCACCCGCTGCAGTGCGTCATGGAAAAGAAATGA

Upstream 100 bases:

>100_bases
GGCTTAAAATCGCATCTTAACGACCTAGATATGGAGAGGCGAAGTTCTCCCTCCTGGCAATCAGCTGTCGGTTTGAGAAT
AGTTTGGAGAATGATGAAAG

Downstream 100 bases:

>100_bases
GGATCGCAACGTGCCAACTTTTTCCCCAAGTCTCGAGAAGGCGCTGCACCAGGCACTGACCTTTGCGAATGAGCGTCACC
ACGAATATGCGACGCTCGAA

Product: ATP-dependent Clp protease adaptor protein ClpS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MIAKPIYMQGEGDGEDGGTNRGTSVITRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHG
VGECGVFTYEVAETKVSQVMDFARQHQHPLQCVMEKK

Sequences:

>Translated_117_residues
MIAKPIYMQGEGDGEDGGTNRGTSVITRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHG
VGECGVFTYEVAETKVSQVMDFARQHQHPLQCVMEKK
>Mature_117_residues
MIAKPIYMQGEGDGEDGGTNRGTSVITRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILERFFQKDREAATRIMLHVHQHG
VGECGVFTYEVAETKVSQVMDFARQHQHPLQCVMEKK

Specific function: Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation

COG id: COG2127

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ClpS family

Homologues:

Organism=Escherichia coli, GI1787108, Length=89, Percent_Identity=56.1797752808989, Blast_Score=112, Evalue=5e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): CLPS1_AGRT5 (Q8UFN4)

Other databases:

- EMBL:   AE007869
- PIR:   AC2744
- PIR:   B97525
- RefSeq:   NP_354370.1
- ProteinModelPortal:   Q8UFN4
- SMR:   Q8UFN4
- STRING:   Q8UFN4
- GeneID:   1133401
- GenomeReviews:   AE007869_GR
- KEGG:   atu:Atu1363
- eggNOG:   COG2127
- HOGENOM:   HBG644923
- OMA:   FVIHILE
- PhylomeDB:   Q8UFN4
- ProtClustDB:   PRK00033
- BioCyc:   ATUM176299-1:ATU1363-MONOMER
- HAMAP:   MF_00302
- InterPro:   IPR022935
- InterPro:   IPR003769
- InterPro:   IPR014719
- Gene3D:   G3DSA:3.30.1390.10

Pfam domain/function: PF02617 ClpS; SSF54736 Ribosomal_L7/12_C/ClpS-like

EC number: NA

Molecular weight: Translated: 13489; Mature: 13489

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIAKPIYMQGEGDGEDGGTNRGTSVITRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILER
CCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
FFQKDREAATRIMLHVHQHGVGECGVFTYEVAETKVSQVMDFARQHQHPLQCVMEKK
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHCCCC
>Mature Secondary Structure
MIAKPIYMQGEGDGEDGGTNRGTSVITRVKPKTKRPNLYRVLLLNDDYTPMEFVIHILER
CCCCCEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEECCCCCHHHHHHHHHHH
FFQKDREAATRIMLHVHQHGVGECGVFTYEVAETKVSQVMDFARQHQHPLQCVMEKK
HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11743193; 11743194