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The map label for this gene is atoS [C]

Identifier: 15888688

GI number: 15888688

Start: 1355121

End: 1357706

Strand: Direct

Name: atoS [C]

Synonym: Atu1362

Alternate gene names: 15888688

Gene position: 1355121-1357706 (Clockwise)

Preceding gene: 159184729

Following gene: 15888689

Centisome position: 47.69

GC content: 60.83

Gene sequence:

>2586_bases
ATGACACGGGTGCGCGAGACAAGCGACAACGACCTTCCGCTGGTGGACAGGCGTGCCCGTTCCGGCACGGTCTTGCGCAT
TCTGCTTCTGGCGCTGGTTCTGATCGCGGCCGCGGCCGCCTTCGTTTATTTCAAGGATTCGCTGGAAAACGAAATCGTGC
TCGGCATTCTCGGCGTGCTGGCCATGATGGGCATCTTCTTCCTCGTCTCGTCGATCATCGGCTTCATCGAGGTGATGCCG
CAATCGCAATCGGACGGCCTTGCCCGCCGGTTTCTTTCGGCCCACCCCGAAGGCACGCTGATCACCGATGCCAAGGGGCA
TATGGTCTATGCCAACGCCACCTATTGCCGCATGAGCGGGACCACGAAGGCGAGCGACATCCAGAGCCTCGAGACGCTTT
TGTCGCGCAGCCGCGAATCGACCGAAGCGCTTTATCGTCTCATCAACGTGCTGCGCGAAGGCCGCGACGGTTACGAGGAG
TTCCGGCTGCTGAAACCGCTCGGCGATGATACCGGCGCGGGGCCGCATTGGTACAGGCTGAAAGGCCGGGTGCTGAAGGA
TGCGGGCGGCGAGGGGCTGCACGTTTTCCAGATCGCCGACATCACGCCGGAGCGCGAGGATCAGGAGCGTTTCTTCCGCG
AATTGCAGAACGCCATCGATTACCTCGATCACGCCCCTGCCGGTTTCTTTTCCGCCAGCCGCAAGGGCGAGATCGTTTAT
CTGAACGCCACCCTGTCGGAATGGCTCGGCATCGATCTAGCGCAGTTTTCGCCGGGTTCGATGACCATCTCGGATATCGT
CGCCGGCGAAGGCATGGCGCTGATCGATTCCGTCCATCCGCAGGGCACGGCCAAGCGCACCGAAATCCTCGATCTCGACA
TGCGCCGGGTGAACGGCCAGAGCATGCCGGCCCGCCTCGTGCATCAGGTTACGGCAAAGGATGGTGCGCCGGGTGAGAGC
CGGACGATCGTTCTGATGCGTTCGAAGGGGCAGGAGGATACGGAATCCTCCTCCGCCATGCGCTTCACGCGCTTCTTCAA
CAATACGCCGATGGCGATCGCCTCGCTTGATGGCGAAGGCCGCATCCTGCGCATCAACGCGCCGTTCCTCAAGCTCTTTT
CCGGCGTCGTCGGGCGTGACGATATCGACCGAGGCGTGGCACTCGAAACCGTTCTTCACGACAATGAGAAGCCGCGGCTG
GAGCAGGCTTTGGCCGAAGCCAAGGATCGTCAGGGTGATATCGCACCGTTCGATTCCCGCCATCCGAGCGACGAGGGCCG
GCATTTCCGTTTCTACGTCAACGCCGTCATCGACCAGGACGACGAGGCGCCGGAAGAAGTGGCGATCGTTTACGCCATCG
AGGTGACCGAGCAGAAGGCGCTCGAAACCCAGATGGCGCAGACCCAGAAGATGAATGCGGTCGGCACGCTGGCGGGCGGC
ATTGCCCACGACTTCAACAACGTTCTCACCGCCATCCTGCTGTCGTCCGACCATCTTCTGCTGCAGGCGCGGCCCGCCGA
TCCGAGCTTTGCCGATCTCATGGAGATCAAACGCAATGCCAACCGCGCCGCCGTGCTGGTGCGCCAGCTTCTCGCTTTCT
CGCGAAAGCAGACGATGCGTCCGGCCGTCCTCAACCTGACCGACGTGATCGGCGATCTTCGCATGCTGGTCGACCGGTTG
ATATCAGGCACCAATGTCAAGCTTGAGGTCGATTACGGCCGCGATCTCTGGCCGGTAAAGACCGATCTCTCGCAATTCGA
GCAGGTGCTCATCAATCTCTGCGTCAATGCGCGCGATGCCATGCCCGATGGTGGCAAAATCACCATCAGGACGCGCAACG
TCGATGAGAAGGAAATCGCAGCGCTTGGCCGTCCCGAATTCCCGGCCGAAGACATGGTCATGGTGGAAGTCGCCGATAAC
GGCACGGGCATTCCGCCTGAAATCATGGACAAGATTTTCGAGCCCTTTTTCACCACCAAGGAAGTCGGCAAGGGCACGGG
TCTTGGCCTTTCGATGGTCTACGGCATCGTCAAGCAGTCGGGTGGTTACATCTACCCCGAATCGGAAGTGGGCAAGGGAA
CCGCCTTCCGCATCTATCTGCCGCGCCATGTGGTCGAGGTCGTTCAGGTGATGGGACAGGACGGCGAGATGGTTGCCGCG
CCGGTCGTGGCGGCGGAGCCGGTGAAGGAAGAACCGCTGGATCTCACCGGCAAATCCGCCGTCGTGCTGCTGGTGGAGGA
CGAGGAGGCGGTGAGGCGCGGTGGCAAGCGTATGCTGGAAACCCGCGGCTACACCGTGCACGAGGCCGGTTCCGGCATCG
AGGCACTGGAAGTGATGGAGGAACTGGAAGGCAAGGTCGACATCGTCGTATCCGACGTCGTGATGCCGGAAATGGACGGT
CCGTCGCTGCTGAGAGAATTGCGCAAATCCTATCCAGACCTGAAATTCATCTTCGTTTCCGGTTATGCTGAGGATGCTTT
TGCCAGGAACCTGCCGGCGGATGCCAAGTTCGGTTTCCTGCCGAAACCATTCTCGCTGAAGCAACTCGCCATCGCCGTTC
GCGAAATGCTCGACGACAAGGAGTGA

Upstream 100 bases:

>100_bases
TTTTGACGGTCAAGCGAGTTGCTACAACAAATTCTGCTGCCCGATTCCGTCGAGGAAATAAGGCTGACCGAATGACGACC
TGCACGACTGCGAGGCCAAG

Downstream 100 bases:

>100_bases
TGCTGGCGGTGGCCAACCGGATTCGCCCGCGTCATTCGCTCTGCACGCGGCCCGAGTTGCGCTGTTCCCGCCGGTTTGTT
CCGCTCTTCCGTCTTATGCC

Product: two component sensor kinase

Products: NA

Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]

Number of amino acids: Translated: 861; Mature: 860

Protein sequence:

>861_residues
MTRVRETSDNDLPLVDRRARSGTVLRILLLALVLIAAAAAFVYFKDSLENEIVLGILGVLAMMGIFFLVSSIIGFIEVMP
QSQSDGLARRFLSAHPEGTLITDAKGHMVYANATYCRMSGTTKASDIQSLETLLSRSRESTEALYRLINVLREGRDGYEE
FRLLKPLGDDTGAGPHWYRLKGRVLKDAGGEGLHVFQIADITPEREDQERFFRELQNAIDYLDHAPAGFFSASRKGEIVY
LNATLSEWLGIDLAQFSPGSMTISDIVAGEGMALIDSVHPQGTAKRTEILDLDMRRVNGQSMPARLVHQVTAKDGAPGES
RTIVLMRSKGQEDTESSSAMRFTRFFNNTPMAIASLDGEGRILRINAPFLKLFSGVVGRDDIDRGVALETVLHDNEKPRL
EQALAEAKDRQGDIAPFDSRHPSDEGRHFRFYVNAVIDQDDEAPEEVAIVYAIEVTEQKALETQMAQTQKMNAVGTLAGG
IAHDFNNVLTAILLSSDHLLLQARPADPSFADLMEIKRNANRAAVLVRQLLAFSRKQTMRPAVLNLTDVIGDLRMLVDRL
ISGTNVKLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDAMPDGGKITIRTRNVDEKEIAALGRPEFPAEDMVMVEVADN
GTGIPPEIMDKIFEPFFTTKEVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYLPRHVVEVVQVMGQDGEMVAA
PVVAAEPVKEEPLDLTGKSAVVLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEVMEELEGKVDIVVSDVVMPEMDG
PSLLRELRKSYPDLKFIFVSGYAEDAFARNLPADAKFGFLPKPFSLKQLAIAVREMLDDKE

Sequences:

>Translated_861_residues
MTRVRETSDNDLPLVDRRARSGTVLRILLLALVLIAAAAAFVYFKDSLENEIVLGILGVLAMMGIFFLVSSIIGFIEVMP
QSQSDGLARRFLSAHPEGTLITDAKGHMVYANATYCRMSGTTKASDIQSLETLLSRSRESTEALYRLINVLREGRDGYEE
FRLLKPLGDDTGAGPHWYRLKGRVLKDAGGEGLHVFQIADITPEREDQERFFRELQNAIDYLDHAPAGFFSASRKGEIVY
LNATLSEWLGIDLAQFSPGSMTISDIVAGEGMALIDSVHPQGTAKRTEILDLDMRRVNGQSMPARLVHQVTAKDGAPGES
RTIVLMRSKGQEDTESSSAMRFTRFFNNTPMAIASLDGEGRILRINAPFLKLFSGVVGRDDIDRGVALETVLHDNEKPRL
EQALAEAKDRQGDIAPFDSRHPSDEGRHFRFYVNAVIDQDDEAPEEVAIVYAIEVTEQKALETQMAQTQKMNAVGTLAGG
IAHDFNNVLTAILLSSDHLLLQARPADPSFADLMEIKRNANRAAVLVRQLLAFSRKQTMRPAVLNLTDVIGDLRMLVDRL
ISGTNVKLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDAMPDGGKITIRTRNVDEKEIAALGRPEFPAEDMVMVEVADN
GTGIPPEIMDKIFEPFFTTKEVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYLPRHVVEVVQVMGQDGEMVAA
PVVAAEPVKEEPLDLTGKSAVVLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEVMEELEGKVDIVVSDVVMPEMDG
PSLLRELRKSYPDLKFIFVSGYAEDAFARNLPADAKFGFLPKPFSLKQLAIAVREMLDDKE
>Mature_860_residues
TRVRETSDNDLPLVDRRARSGTVLRILLLALVLIAAAAAFVYFKDSLENEIVLGILGVLAMMGIFFLVSSIIGFIEVMPQ
SQSDGLARRFLSAHPEGTLITDAKGHMVYANATYCRMSGTTKASDIQSLETLLSRSRESTEALYRLINVLREGRDGYEEF
RLLKPLGDDTGAGPHWYRLKGRVLKDAGGEGLHVFQIADITPEREDQERFFRELQNAIDYLDHAPAGFFSASRKGEIVYL
NATLSEWLGIDLAQFSPGSMTISDIVAGEGMALIDSVHPQGTAKRTEILDLDMRRVNGQSMPARLVHQVTAKDGAPGESR
TIVLMRSKGQEDTESSSAMRFTRFFNNTPMAIASLDGEGRILRINAPFLKLFSGVVGRDDIDRGVALETVLHDNEKPRLE
QALAEAKDRQGDIAPFDSRHPSDEGRHFRFYVNAVIDQDDEAPEEVAIVYAIEVTEQKALETQMAQTQKMNAVGTLAGGI
AHDFNNVLTAILLSSDHLLLQARPADPSFADLMEIKRNANRAAVLVRQLLAFSRKQTMRPAVLNLTDVIGDLRMLVDRLI
SGTNVKLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDAMPDGGKITIRTRNVDEKEIAALGRPEFPAEDMVMVEVADNG
TGIPPEIMDKIFEPFFTTKEVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYLPRHVVEVVQVMGQDGEMVAAP
VVAAEPVKEEPLDLTGKSAVVLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEVMEELEGKVDIVVSDVVMPEMDGP
SLLRELRKSYPDLKFIFVSGYAEDAFARNLPADAKFGFLPKPFSLKQLAIAVREMLDDKE

Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Integral Membrane Protein. Inner Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788549, Length=421, Percent_Identity=25.8907363420428, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI1790436, Length=245, Percent_Identity=31.0204081632653, Blast_Score=104, Evalue=2e-23,
Organism=Escherichia coli, GI87081816, Length=262, Percent_Identity=29.0076335877863, Blast_Score=94, Evalue=4e-20,
Organism=Escherichia coli, GI1790300, Length=263, Percent_Identity=32.6996197718631, Blast_Score=92, Evalue=1e-19,
Organism=Escherichia coli, GI48994928, Length=242, Percent_Identity=33.0578512396694, Blast_Score=92, Evalue=2e-19,
Organism=Escherichia coli, GI1788713, Length=249, Percent_Identity=29.718875502008, Blast_Score=83, Evalue=9e-17,
Organism=Escherichia coli, GI1786912, Length=246, Percent_Identity=27.6422764227642, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1786600, Length=256, Percent_Identity=27.734375, Blast_Score=64, Evalue=4e-11,
Organism=Escherichia coli, GI1788550, Length=116, Percent_Identity=32.7586206896552, Blast_Score=64, Evalue=5e-11,
Organism=Escherichia coli, GI1786783, Length=235, Percent_Identity=25.9574468085106, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003594
- InterPro:   IPR011006
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR004358
- InterPro:   IPR003661
- InterPro:   IPR005467
- InterPro:   IPR009082
- InterPro:   IPR001789 [H]

Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]

EC number: =2.7.13.3 [H]

Molecular weight: Translated: 94980; Mature: 94849

Theoretical pI: Translated: 4.80; Mature: 4.80

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRVRETSDNDLPLVDRRARSGTVLRILLLALVLIAAAAAFVYFKDSLENEIVLGILGVL
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AMMGIFFLVSSIIGFIEVMPQSQSDGLARRFLSAHPEGTLITDAKGHMVYANATYCRMSG
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEECCCCCEEEECCEEEEECC
TTKASDIQSLETLLSRSRESTEALYRLINVLREGRDGYEEFRLLKPLGDDTGAGPHWYRL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCEEEE
KGRVLKDAGGEGLHVFQIADITPEREDQERFFRELQNAIDYLDHAPAGFFSASRKGEIVY
CCCCEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
LNATLSEWLGIDLAQFSPGSMTISDIVAGEGMALIDSVHPQGTAKRTEILDLDMRRVNGQ
EECCHHHHHCCCCCCCCCCCEEHHHHHCCCCEEEHCCCCCCCCCCHHHHHHHHHHHCCCC
SMPARLVHQVTAKDGAPGESRTIVLMRSKGQEDTESSSAMRFTRFFNNTPMAIASLDGEG
CCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
RILRINAPFLKLFSGVVGRDDIDRGVALETVLHDNEKPRLEQALAEAKDRQGDIAPFDSR
EEEEECCHHHHHHHHHCCCCCCCCCCEEHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCC
HPSDEGRHFRFYVNAVIDQDDEAPEEVAIVYAIEVTEQKALETQMAQTQKMNAVGTLAGG
CCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
IAHDFNNVLTAILLSSDHLLLQARPADPSFADLMEIKRNANRAAVLVRQLLAFSRKQTMR
HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PAVLNLTDVIGDLRMLVDRLISGTNVKLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCHHCC
MPDGGKITIRTRNVDEKEIAALGRPEFPAEDMVMVEVADNGTGIPPEIMDKIFEPFFTTK
CCCCCEEEEEECCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCHH
EVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYLPRHVVEVVQVMGQDGEMVAA
HHCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEE
PVVAAEPVKEEPLDLTGKSAVVLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEVME
CCEECCCCCCCCCCCCCCCEEEEEECCHHHHHHCHHHHHHHCCCEEECCCCCHHHHHHHH
ELEGKVDIVVSDVVMPEMDGPSLLRELRKSYPDLKFIFVSGYAEDAFARNLPADAKFGFL
HHCCCEEEEEECEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCCCCCCC
PKPFSLKQLAIAVREMLDDKE
CCCCCHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
TRVRETSDNDLPLVDRRARSGTVLRILLLALVLIAAAAAFVYFKDSLENEIVLGILGVL
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
AMMGIFFLVSSIIGFIEVMPQSQSDGLARRFLSAHPEGTLITDAKGHMVYANATYCRMSG
HHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCEEECCCCCEEEECCEEEEECC
TTKASDIQSLETLLSRSRESTEALYRLINVLREGRDGYEEFRLLKPLGDDTGAGPHWYRL
CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCCCCCCEEEE
KGRVLKDAGGEGLHVFQIADITPEREDQERFFRELQNAIDYLDHAPAGFFSASRKGEIVY
CCCCEECCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEE
LNATLSEWLGIDLAQFSPGSMTISDIVAGEGMALIDSVHPQGTAKRTEILDLDMRRVNGQ
EECCHHHHHCCCCCCCCCCCEEHHHHHCCCCEEEHCCCCCCCCCCHHHHHHHHHHHCCCC
SMPARLVHQVTAKDGAPGESRTIVLMRSKGQEDTESSSAMRFTRFFNNTPMAIASLDGEG
CCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCC
RILRINAPFLKLFSGVVGRDDIDRGVALETVLHDNEKPRLEQALAEAKDRQGDIAPFDSR
EEEEECCHHHHHHHHHCCCCCCCCCCEEHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCC
HPSDEGRHFRFYVNAVIDQDDEAPEEVAIVYAIEVTEQKALETQMAQTQKMNAVGTLAGG
CCCCCCCEEEEEEEEEECCCCCCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
IAHDFNNVLTAILLSSDHLLLQARPADPSFADLMEIKRNANRAAVLVRQLLAFSRKQTMR
HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
PAVLNLTDVIGDLRMLVDRLISGTNVKLEVDYGRDLWPVKTDLSQFEQVLINLCVNARDA
HHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCHHCC
MPDGGKITIRTRNVDEKEIAALGRPEFPAEDMVMVEVADNGTGIPPEIMDKIFEPFFTTK
CCCCCEEEEEECCCCHHHHHHCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCHH
EVGKGTGLGLSMVYGIVKQSGGYIYPESEVGKGTAFRIYLPRHVVEVVQVMGQDGEMVAA
HHCCCCCCHHHHHHHHHHCCCCEECCCCCCCCCCEEEEECCHHHHHHHHHHCCCCCEEEE
PVVAAEPVKEEPLDLTGKSAVVLLVEDEEAVRRGGKRMLETRGYTVHEAGSGIEALEVME
CCEECCCCCCCCCCCCCCCEEEEEECCHHHHHHCHHHHHHHCCCEEECCCCCHHHHHHHH
ELEGKVDIVVSDVVMPEMDGPSLLRELRKSYPDLKFIFVSGYAEDAFARNLPADAKFGFL
HHCCCEEEEEECEECCCCCCHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCCCCCCCCCC
PKPFSLKQLAIAVREMLDDKE
CCCCCHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA