Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
---|---|
Accession | NC_003062 |
Length | 2,841,580 |
Click here to switch to the map view.
The map label for this gene is 15888558
Identifier: 15888558
GI number: 15888558
Start: 1215424
End: 1216155
Strand: Direct
Name: 15888558
Synonym: Atu1222
Alternate gene names: NA
Gene position: 1215424-1216155 (Clockwise)
Preceding gene: 159184671
Following gene: 159184672
Centisome position: 42.77
GC content: 56.28
Gene sequence:
>732_bases GTGCTGTCTTGCCGCCTGCCGGCGGGCGCGCAGGTTCATCGATTCATCCGGATAAATCTCGCCGTCCTTGCCGTTCAGTT CACTGTCTGTCTCGAAGCGTGCCACGTCCTCATCGCGAATGTCGAGCGGTTCGGTTTCAGGCTTTTTCGGGGTGGTCATG AAATTATCTCCTGCGGGTTTCTGCAGGACAAACGATCCCAGGTCGATGACGGTTCCCTTCACGCGGAAATGCGCATTCGT TGGGGGCCTGTGCGGAACAAACTCTGGCTTTTTCTGTTTTTTCAGTGGCACAATCGAAACCGGTGCAACAGGAAGAGGAG GTCCGTTATGAGCCATGACCGCGAAGCCGCAATCCGTGAAAAAGCGCGCGCAATATGGGAGAGGGAAGGAAGACCCGACG GGCATCATGAAAGACACTGGATAGAGGCGGAACGGCAGCTTTCCGCAGAAGCGGAAGCAGCAAAGTCAAAAAGCGGGAAT GGCGTGAAGAAATCCGCTGCCGCGAAGACTTCGACGGAGAAGGCGCCCGCAAAGAAGACGCCAGCGAAAAAGGCGCCCGC AGCAAAAGCCAAATCTCCGGCGGTGAAATCGCTTGAGAAGGAACAGAAGTCTGGGAAAAACAACAAGGAAGACGATCTGA CCGAGAGCCTTGAGGAGAGCTTTCCTGCCAGTGATCCGCCAGCGCTGACCAACGCCGCGAAGGCGACGAAACGGGCGGTC AAGAAAAGCTGA
Upstream 100 bases:
>100_bases CTTATACATTTCAAGACGCTTATGGCTGCTCCCTGACGCCAGGTGCCGCCTCGCGCTGGTCGTCGTCTTCAAGGTCCGTG GCGACGATGAAGGCATCCTC
Downstream 100 bases:
>100_bases TCGTCTGACCGGCGTTTGACTGGGCAGAGACAAAGATCCCCGGGTAGGATCGGACAAATTGCGGCTGTGCGGCGTGTTCA CCGAGATATGCGCAGCCGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 243; Mature: 243
Protein sequence:
>243_residues MLSCRLPAGAQVHRFIRINLAVLAVQFTVCLEACHVLIANVERFGFRLFRGGHEIISCGFLQDKRSQVDDGSLHAEMRIR WGPVRNKLWLFLFFQWHNRNRCNRKRRSVMSHDREAAIREKARAIWEREGRPDGHHERHWIEAERQLSAEAEAAKSKSGN GVKKSAAAKTSTEKAPAKKTPAKKAPAAKAKSPAVKSLEKEQKSGKNNKEDDLTESLEESFPASDPPALTNAAKATKRAV KKS
Sequences:
>Translated_243_residues MLSCRLPAGAQVHRFIRINLAVLAVQFTVCLEACHVLIANVERFGFRLFRGGHEIISCGFLQDKRSQVDDGSLHAEMRIR WGPVRNKLWLFLFFQWHNRNRCNRKRRSVMSHDREAAIREKARAIWEREGRPDGHHERHWIEAERQLSAEAEAAKSKSGN GVKKSAAAKTSTEKAPAKKTPAKKAPAAKAKSPAVKSLEKEQKSGKNNKEDDLTESLEESFPASDPPALTNAAKATKRAV KKS >Mature_243_residues MLSCRLPAGAQVHRFIRINLAVLAVQFTVCLEACHVLIANVERFGFRLFRGGHEIISCGFLQDKRSQVDDGSLHAEMRIR WGPVRNKLWLFLFFQWHNRNRCNRKRRSVMSHDREAAIREKARAIWEREGRPDGHHERHWIEAERQLSAEAEAAKSKSGN GVKKSAAAKTSTEKAPAKKTPAKKAPAAKAKSPAVKSLEKEQKSGKNNKEDDLTESLEESFPASDPPALTNAAKATKRAV KKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27310; Mature: 27310
Theoretical pI: Translated: 10.87; Mature: 10.87
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLSCRLPAGAQVHRFIRINLAVLAVQFTVCLEACHVLIANVERFGFRLFRGGHEIISCGF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECC LQDKRSQVDDGSLHAEMRIRWGPVRNKLWLFLFFQWHNRNRCNRKRRSVMSHDREAAIRE HHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH KARAIWEREGRPDGHHERHWIEAERQLSAEAEAAKSKSGNGVKKSAAAKTSTEKAPAKKT HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCC PAKKAPAAKAKSPAVKSLEKEQKSGKNNKEDDLTESLEESFPASDPPALTNAAKATKRAV CCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH KKS CCC >Mature Secondary Structure MLSCRLPAGAQVHRFIRINLAVLAVQFTVCLEACHVLIANVERFGFRLFRGGHEIISCGF CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEEECC LQDKRSQVDDGSLHAEMRIRWGPVRNKLWLFLFFQWHNRNRCNRKRRSVMSHDREAAIRE HHHHHHCCCCCCEEEEEEEEECCCCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHH KARAIWEREGRPDGHHERHWIEAERQLSAEAEAAKSKSGNGVKKSAAAKTSTEKAPAKKT HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCC PAKKAPAAKAKSPAVKSLEKEQKSGKNNKEDDLTESLEESFPASDPPALTNAAKATKRAV CCCCCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH KKS CCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA