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The map label for this gene is 15888521

Identifier: 15888521

GI number: 15888521

Start: 1176283

End: 1178874

Strand: Direct

Name: 15888521

Synonym: Atu1183

Alternate gene names: NA

Gene position: 1176283-1178874 (Clockwise)

Preceding gene: 15888520

Following gene: 159184654

Centisome position: 41.4

GC content: 58.18

Gene sequence:

>2592_bases
TTGATCGAACTCGACACCACTAACGAACTTTTTCTCGCCGCCCATGGATGCCTCCCGACCGAGCATGAAGCTTGGGAAAA
GCAGATCGCTCTTGAAGAAGAGATGCGTTCGGCAGGCATCGCCCGCTTCGAGAAGGGCTTGGAAAAGAACCGGGAGAAGA
ACGCCGAGGCGTCCAATCTCTCCTCGCGCCGCATGATCATCCATGCACACGCTCAAGTGATCGCTGGTCTTGAGGCATTT
CTAGCCGAGGCAAGCTCAGGCAAGGCAGGGAAGAAGCATACCGCCGTGGCGTATCTCAAAGATGCGGACCTCGACGTGGT
TGCCCATCTCACGCTGCGGAACCTCTTCGATTACGTCTCCATGCGCATGAAGCTCACGCCGCTGTCCATCCGGCTCGCTG
CGATGGTCGAGGATGAGCTGTTTTTCAATGCGTTCAAGGGTCACGACAAGGACGCCTATGAATACGCAAGGAAGAAGATC
AGCGAGCAGACACACAACGCAGTCCACCAGAAGCGCGCCATGACCAAGCATGCCAAGCATAAGGGTGCCGAGTGGCAGGA
CTGGAGCCAAGACGTGAAAGCCAAGGTCGGCTTGAAGCTGATCGAGATCGCCGTGGAACAGACCGGCCTCTTTGAGATCG
TCCGTCAATCGGAAGGCGCTCACAACACCAACATTTACGTGGTCGCTACCAAGGAAACGTTGGATTGGCTGGCCACGGAG
AACTCCCGCCTTGCACCGTTATCTCCGGTTTATCTTCCGACCCTAGTTCCACCGCGTCCGTGGACCTCTCCATTCCGAGG
CGGCTACTGGTCGGGCAGGGTTCGCAACCTCAGGCTCATCAAGACCGGCAACCGTCAGTATCTGATGGACCTTGAGAGCG
TGGATATGCCGAAGGTCTACCACTCGATCAACGCGATGCAGAACACGGCTTGGTCAATCAATCACCGCGTCTATGAGGTG
ATGGCTTCGCTTTGGGATAATCAATCCACCCTCGCATGCATACCCCAGGCTGATGATATGCCGCTCCCGGAGAAACCCAT
GTGGCTCGCCCCGGAAATGAAAAGGGAAGACATGTCGCCGGAGCAGCTCGAAGAGTTCTCGCGTTGGAAGTCCGAGCGGA
CCACCATCTACGAGGCGAACGCCCGTGCCGTCTCCAAGCGTCTGGCTTTCTCCCGCATGCTGGGCGTTGCCACTCGGTTC
AAGGATGAGGAGGAGTTCTACTTCCCGCATCAGATGGACTTCCGTGGTCGCGTCTACGCTGTCCCGCTCTTCCTTAATCC
CCAGGGCGACGATGCGTCCCATGGTCTCCTCCAGTTCGCAAACTCGGTCCCGATCACGAACGAGGAGGGAGCTGACTGGC
TGGCCATTCACGGCGCTGGTCTTTGGGGCGTGGACAAATGCTCGATGAATGAGCGTGTCGAGTGGGTCATGGCGAACCAG
AGGGAAATCCTCGCGTCCGCTGAGAACCCCTACGACAACCGCTTCTGGTTGACCGCAGAGAAACCATGGCAGGCGCTTGC
GTTCTGCTTCGAGTGGCAGGGCTACGTTGCCGAGGGCTTCGCCTTTCATTCGCACCTGCCGGTACAGATGGACGGCACAT
GCAACGGCCTCCAAAACTTCTCGGCCATGCTCCTAGACGAGATCGGCGGGGCAGCAGTCAACCTCGTCCCCAGCGACAAG
CCCAACGATATCTATGCCACGGTCGCTTCGGTCCTCATCGCGAAGCTCCGTGATATCGCTGCGGCATGCCCGGAAGACAC
GACCACCAAGGAAGTAAAGGACAAGGAGACGAAGGAGAACAAGACCATCGTTGTTGAAAGCGATGGCTCGATGGCTCGGA
AGTGGCTGGCCTATGGCATCACCCGCAAGGTGACCAAGCGCCCAGTCATGACGCTCGCCTATGGTGCATCTGAGTTCGGC
TTCCGGGAACAGGTGTTCACCGATACGGTCACCCCCTGGAAACAGGCAGCGGGCGAGGCGTTCCCCTTCGAGGGCACCGG
CTTCGCTGCGGCTTCCTTCCTCGGTCTCCTCATTTGGGATTGCGTGGGTGAAGTCGTGGTCGCGGCTGCTGGTGCCATGG
ACTGGCTCCAGAAGGTGGCCAAGATCGCGGCGAAGGAAAGCTTGCCCGTCATCTGGAATACCCCGGCTGGCCTCAAGGTC
ATGCAGGAATACACCACGAGCGAACAGAAGCGGCTTGAGCTGACGTTCCAGAAGGTGCGCCTCCAGCTCTCCATCGACGT
TGCATCTAAGAAGATCGACAAGCGCAAGCAAGGAAGCGGCATCTCGCCCAACTGGGTCCACTCAATGGACGCGGCGCATA
TGCAGCTCACCGTTTCCCGATGCCACGACGAAGGTATCCGTTCGTTCTCGCTCATCCATGACAGCTACGGAACCCACGCG
GGTAACGCCTGGGCGATGGCTCAATTCCTCCGGGAAGAGTTCGTCAAAATGTACGGTGACCACGATGTCCTTGCTGAGTT
TGGCCGAGAGATTACGGCCATGCTCCCCGAAGGAACCCAGCTTCCTCCGCTCCCTGAAAAAGGCTCCCTGGATTTGTCTC
AAGTCCTTGAGAGCGCTTTCTTTTTCGCCTGA

Upstream 100 bases:

>100_bases
ACCATAGGCATCTCACAAAACCCCTCACCATAGGCCCAGTCCCCGGTTCACTTACTTAGGTGTTCCGAGGGCGGGCCTTT
TCTTTTGGAAGGCTCTTCCC

Downstream 100 bases:

>100_bases
TCAATCCACTAGTGGAAACATTTGCGACGGTGATTGCCCCTCACCATAGCAATCCTCACAAATCGACAAGGATTTTCCCC
ATGACCACCAACGTCAATGA

Product: DNA-directed RNA polymerase

Products: NA

Alternate protein names: DNA-Dependent RNA Polymerase Domain Protein; RNA-Polymerase; DNA-Dependent RNA Polymerase

Number of amino acids: Translated: 863; Mature: 863

Protein sequence:

>863_residues
MIELDTTNELFLAAHGCLPTEHEAWEKQIALEEEMRSAGIARFEKGLEKNREKNAEASNLSSRRMIIHAHAQVIAGLEAF
LAEASSGKAGKKHTAVAYLKDADLDVVAHLTLRNLFDYVSMRMKLTPLSIRLAAMVEDELFFNAFKGHDKDAYEYARKKI
SEQTHNAVHQKRAMTKHAKHKGAEWQDWSQDVKAKVGLKLIEIAVEQTGLFEIVRQSEGAHNTNIYVVATKETLDWLATE
NSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSGRVRNLRLIKTGNRQYLMDLESVDMPKVYHSINAMQNTAWSINHRVYEV
MASLWDNQSTLACIPQADDMPLPEKPMWLAPEMKREDMSPEQLEEFSRWKSERTTIYEANARAVSKRLAFSRMLGVATRF
KDEEEFYFPHQMDFRGRVYAVPLFLNPQGDDASHGLLQFANSVPITNEEGADWLAIHGAGLWGVDKCSMNERVEWVMANQ
REILASAENPYDNRFWLTAEKPWQALAFCFEWQGYVAEGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLVPSDK
PNDIYATVASVLIAKLRDIAAACPEDTTTKEVKDKETKENKTIVVESDGSMARKWLAYGITRKVTKRPVMTLAYGASEFG
FREQVFTDTVTPWKQAAGEAFPFEGTGFAAASFLGLLIWDCVGEVVVAAAGAMDWLQKVAKIAAKESLPVIWNTPAGLKV
MQEYTTSEQKRLELTFQKVRLQLSIDVASKKIDKRKQGSGISPNWVHSMDAAHMQLTVSRCHDEGIRSFSLIHDSYGTHA
GNAWAMAQFLREEFVKMYGDHDVLAEFGREITAMLPEGTQLPPLPEKGSLDLSQVLESAFFFA

Sequences:

>Translated_863_residues
MIELDTTNELFLAAHGCLPTEHEAWEKQIALEEEMRSAGIARFEKGLEKNREKNAEASNLSSRRMIIHAHAQVIAGLEAF
LAEASSGKAGKKHTAVAYLKDADLDVVAHLTLRNLFDYVSMRMKLTPLSIRLAAMVEDELFFNAFKGHDKDAYEYARKKI
SEQTHNAVHQKRAMTKHAKHKGAEWQDWSQDVKAKVGLKLIEIAVEQTGLFEIVRQSEGAHNTNIYVVATKETLDWLATE
NSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSGRVRNLRLIKTGNRQYLMDLESVDMPKVYHSINAMQNTAWSINHRVYEV
MASLWDNQSTLACIPQADDMPLPEKPMWLAPEMKREDMSPEQLEEFSRWKSERTTIYEANARAVSKRLAFSRMLGVATRF
KDEEEFYFPHQMDFRGRVYAVPLFLNPQGDDASHGLLQFANSVPITNEEGADWLAIHGAGLWGVDKCSMNERVEWVMANQ
REILASAENPYDNRFWLTAEKPWQALAFCFEWQGYVAEGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLVPSDK
PNDIYATVASVLIAKLRDIAAACPEDTTTKEVKDKETKENKTIVVESDGSMARKWLAYGITRKVTKRPVMTLAYGASEFG
FREQVFTDTVTPWKQAAGEAFPFEGTGFAAASFLGLLIWDCVGEVVVAAAGAMDWLQKVAKIAAKESLPVIWNTPAGLKV
MQEYTTSEQKRLELTFQKVRLQLSIDVASKKIDKRKQGSGISPNWVHSMDAAHMQLTVSRCHDEGIRSFSLIHDSYGTHA
GNAWAMAQFLREEFVKMYGDHDVLAEFGREITAMLPEGTQLPPLPEKGSLDLSQVLESAFFFA
>Mature_863_residues
MIELDTTNELFLAAHGCLPTEHEAWEKQIALEEEMRSAGIARFEKGLEKNREKNAEASNLSSRRMIIHAHAQVIAGLEAF
LAEASSGKAGKKHTAVAYLKDADLDVVAHLTLRNLFDYVSMRMKLTPLSIRLAAMVEDELFFNAFKGHDKDAYEYARKKI
SEQTHNAVHQKRAMTKHAKHKGAEWQDWSQDVKAKVGLKLIEIAVEQTGLFEIVRQSEGAHNTNIYVVATKETLDWLATE
NSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSGRVRNLRLIKTGNRQYLMDLESVDMPKVYHSINAMQNTAWSINHRVYEV
MASLWDNQSTLACIPQADDMPLPEKPMWLAPEMKREDMSPEQLEEFSRWKSERTTIYEANARAVSKRLAFSRMLGVATRF
KDEEEFYFPHQMDFRGRVYAVPLFLNPQGDDASHGLLQFANSVPITNEEGADWLAIHGAGLWGVDKCSMNERVEWVMANQ
REILASAENPYDNRFWLTAEKPWQALAFCFEWQGYVAEGFAFHSHLPVQMDGTCNGLQNFSAMLLDEIGGAAVNLVPSDK
PNDIYATVASVLIAKLRDIAAACPEDTTTKEVKDKETKENKTIVVESDGSMARKWLAYGITRKVTKRPVMTLAYGASEFG
FREQVFTDTVTPWKQAAGEAFPFEGTGFAAASFLGLLIWDCVGEVVVAAAGAMDWLQKVAKIAAKESLPVIWNTPAGLKV
MQEYTTSEQKRLELTFQKVRLQLSIDVASKKIDKRKQGSGISPNWVHSMDAAHMQLTVSRCHDEGIRSFSLIHDSYGTHA
GNAWAMAQFLREEFVKMYGDHDVLAEFGREITAMLPEGTQLPPLPEKGSLDLSQVLESAFFFA

Specific function: Unknown

COG id: COG5108

COG function: function code K; Mitochondrial DNA-directed RNA polymerase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI110618253, Length=633, Percent_Identity=30.4897314375987, Blast_Score=271, Evalue=1e-72,
Organism=Caenorhabditis elegans, GI193203364, Length=652, Percent_Identity=27.3006134969325, Blast_Score=229, Evalue=4e-60,
Organism=Caenorhabditis elegans, GI193203366, Length=662, Percent_Identity=27.3413897280967, Blast_Score=228, Evalue=8e-60,
Organism=Saccharomyces cerevisiae, GI6321072, Length=672, Percent_Identity=31.6964285714286, Blast_Score=296, Evalue=8e-81,
Organism=Drosophila melanogaster, GI20129143, Length=640, Percent_Identity=29.53125, Blast_Score=247, Evalue=3e-65,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 97076; Mature: 97076

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS00900 RNA_POL_PHAGE_1 ; PS00489 RNA_POL_PHAGE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIELDTTNELFLAAHGCLPTEHEAWEKQIALEEEMRSAGIARFEKGLEKNREKNAEASNL
CEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSRRMIIHAHAQVIAGLEAFLAEASSGKAGKKHTAVAYLKDADLDVVAHLTLRNLFDYVS
CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MRMKLTPLSIRLAAMVEDELFFNAFKGHDKDAYEYARKKISEQTHNAVHQKRAMTKHAKH
HHEEECCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGAEWQDWSQDVKAKVGLKLIEIAVEQTGLFEIVRQSEGAHNTNIYVVATKETLDWLATE
CCCCCHHHHHHHHHHHCHHHEEHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHCC
NSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSGRVRNLRLIKTGNRQYLMDLESVDMPKVY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHH
HSINAMQNTAWSINHRVYEVMASLWDNQSTLACIPQADDMPLPEKPMWLAPEMKREDMSP
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCH
EQLEEFSRWKSERTTIYEANARAVSKRLAFSRMLGVATRFKDEEEFYFPHQMDFRGRVYA
HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEE
VPLFLNPQGDDASHGLLQFANSVPITNEEGADWLAIHGAGLWGVDKCSMNERVEWVMANQ
EEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHEEECCC
REILASAENPYDNRFWLTAEKPWQALAFCFEWQGYVAEGFAFHSHLPVQMDGTCNGLQNF
HHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHCCEEEECCCCEEECCCCCHHHHH
SAMLLDEIGGAAVNLVPSDKPNDIYATVASVLIAKLRDIAAACPEDTTTKEVKDKETKEN
HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
KTIVVESDGSMARKWLAYGITRKVTKRPVMTLAYGASEFGFREQVFTDTVTPWKQAAGEA
CEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCHHHHHHCCCCHHHHHCCCC
FPFEGTGFAAASFLGLLIWDCVGEVVVAAAGAMDWLQKVAKIAAKESLPVIWNTPAGLKV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHH
MQEYTTSEQKRLELTFQKVRLQLSIDVASKKIDKRKQGSGISPNWVHSMDAAHMQLTVSR
HHHHHCCHHHHHHHEEEHEEEEEEEEHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHH
CHDEGIRSFSLIHDSYGTHAGNAWAMAQFLREEFVKMYGDHDVLAEFGREITAMLPEGTQ
HHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHCCCCCCC
LPPLPEKGSLDLSQVLESAFFFA
CCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MIELDTTNELFLAAHGCLPTEHEAWEKQIALEEEMRSAGIARFEKGLEKNREKNAEASNL
CEEECCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SSRRMIIHAHAQVIAGLEAFLAEASSGKAGKKHTAVAYLKDADLDVVAHLTLRNLFDYVS
CCCEEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHH
MRMKLTPLSIRLAAMVEDELFFNAFKGHDKDAYEYARKKISEQTHNAVHQKRAMTKHAKH
HHEEECCCEEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGAEWQDWSQDVKAKVGLKLIEIAVEQTGLFEIVRQSEGAHNTNIYVVATKETLDWLATE
CCCCCHHHHHHHHHHHCHHHEEHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHHHHHCC
NSRLAPLSPVYLPTLVPPRPWTSPFRGGYWSGRVRNLRLIKTGNRQYLMDLESVDMPKVY
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCHHHH
HSINAMQNTAWSINHRVYEVMASLWDNQSTLACIPQADDMPLPEKPMWLAPEMKREDMSP
HHHHHHHHCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCHHHCCCCH
EQLEEFSRWKSERTTIYEANARAVSKRLAFSRMLGVATRFKDEEEFYFPHQMDFRGRVYA
HHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCCCCCEEEE
VPLFLNPQGDDASHGLLQFANSVPITNEEGADWLAIHGAGLWGVDKCSMNERVEWVMANQ
EEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCHHEEECCC
REILASAENPYDNRFWLTAEKPWQALAFCFEWQGYVAEGFAFHSHLPVQMDGTCNGLQNF
HHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCCHHHCCEEEECCCCEEECCCCCHHHHH
SAMLLDEIGGAAVNLVPSDKPNDIYATVASVLIAKLRDIAAACPEDTTTKEVKDKETKEN
HHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCC
KTIVVESDGSMARKWLAYGITRKVTKRPVMTLAYGASEFGFREQVFTDTVTPWKQAAGEA
CEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEECCHHCCCHHHHHHCCCCHHHHHCCCC
FPFEGTGFAAASFLGLLIWDCVGEVVVAAAGAMDWLQKVAKIAAKESLPVIWNTPAGLKV
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCHHHH
MQEYTTSEQKRLELTFQKVRLQLSIDVASKKIDKRKQGSGISPNWVHSMDAAHMQLTVSR
HHHHHCCHHHHHHHEEEHEEEEEEEEHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHHHH
CHDEGIRSFSLIHDSYGTHAGNAWAMAQFLREEFVKMYGDHDVLAEFGREITAMLPEGTQ
HHHHHCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHCCCCCCC
LPPLPEKGSLDLSQVLESAFFFA
CCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA