| Definition | Agrobacterium tumefaciens str. C58 chromosome circular, complete sequence. |
|---|---|
| Accession | NC_003062 |
| Length | 2,841,580 |
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The map label for this gene is ostA [H]
Identifier: 15888446
GI number: 15888446
Start: 1094921
End: 1097302
Strand: Reverse
Name: ostA [H]
Synonym: Atu1106
Alternate gene names: 15888446
Gene position: 1097302-1094921 (Counterclockwise)
Preceding gene: 15888447
Following gene: 15888445
Centisome position: 38.62
GC content: 57.77
Gene sequence:
>2382_bases GTGGCGGTATATGACCGCGGGAATATCAGGCGGCTTTGGACGGCCCTTCTGACAGGTGCCGCTGTGTGCGCGTATTTGGC ATCCAGCCCGGTCGCTTTCGGCCAGGATGGACTGCTTGCGTCGGCAAGCCAAGACGATTCGAAACTCCTGCTTACAGCAA ATGAACTGACCTATAACCGCGATTCCCAGCGCGTCATCGCGAAGGGTGTGGTTCGCATGAATTATTCGGGCTACCGCATG GTGGCCCAGCAAGTGGAATACAACCAGCAGACCGGTCGCGTGATTGCCCATGGCAACATCGAACTGATCGAGCCGGGCGG CAACAAGATCTATGCCGACGAAATGGACGTCACCGACGATTTCGGCCAGGGCTTCGTGAATGCCCTGCGCGTTGAGACCA CGGATAATACCCGTATCGCGGGTGAAAGCGCTGAGCGTCTCAACAGCGACACGATGGTCCTCAATAACGGCGTTTACACC GCCTGCCTGCCCTGCGCCGAACGCCCCGAAAAGGCGCCGCTGTGGCAGGTCAAGGCTGAGCGCGTCATTCAGGACGGCAA GACCCATACGGTGCGGCTGGAAAAGGCCCGCCTGCAACTCTTCGGCCATTCGATCGCTTATATCCCGTTCCTCACGGTTC CGGATAATACGGTCAAGCGGAAGTCCGGTTTCCTGTTCCCGCAGATGAGTATGACCAACAAGCTCGGCTTCGGTATCGGT GTTCCCTATTTCCAGGTTCTGTCCGATACGTCCGACCTCACGGTCACGCCGACCTACTACACAAAACAGGGTCTGCTCCT TCAGGCCGAATTGCGCCAGCGTTTCGAGACCGGCATGCACACGCTGACGATTGCCGGCATCAGCCAGCAGTCTTCGGATA CCTTCATCTCCGGAACGAGTGACGCGTTGAACGATCAGCGCGGCATGGTGGCGACCAAGGGTGATTTCAGGATCAACCCA CGCTGGGCTTTCGGCTGGGACGCCATGGTGCAGTCCGACAACAATTTCTCGCGTACCTATAGCCTGAAGGGCTACAAGAA CGACGTCCAGACCAATCAGATTTATCTGACGGGCACTGGCGAGCGTAACAGCTTCGATGCCCGCGGTTATTACTTCAATG TGCAGGACACGGATAATTCGGAGCTGAAGGAACGCAAGCAGGCGATCGTTCATCCTGTTGTAGACTATCGTTACTTCCTG CCGGATCCGATCTATGGCGGCGAACTTTCGCTGACGACGAACTTCACGAGCATCAGCCGCTCGACGCAGGATTCCTACGC GATGGGCGGTTTCCCGCGCTTCAACGGTCTGGAAGGGTCGTATACGCGCTGGACCACCGAAGCGGAATGGAAGCGCACCA TCACGATGGATAGCGGCCTGCAGATCACGCCGATCCTTGCGGCGCGCGGCGACGCGCTGTGGACCGACATGACCGCGGCT AGCTTCACCTCCGGCGGTACGTCCTATGCCTATGAAGGCATGATCAATGACGACGCAGCGTTGCGCGGCATGGTTACCGG CGGCCTCGAACTGCGTTACCCATGGCTATTCACGGCGCTGAACAGCAATCACGTCATCGAGCCGATCGCGCAAATCTTCG TGCGGCCGAACGAACAATATGCCGGTCGTTTCCCGAACGAGGATGCGCAGGCCTTCGTGTTCGACGCCACCAACCTGTTC GAGCGTGACAAGTTCTCCGGCTTCGACCGGATCGAAGGCGGCACGCGTGCGAATATTGGCTTCCGTTATAACGGCACGTT CGACAATGGTTACGGCATCCGCGCCATTGCCGGTCAGTCCTTCCATCTGGCGGGCGAAAATTCCTTCGCCTCCTACGACC TGCTGAATGTCGGCGCCAATTCCGGCCTCGAATCCGATCGTTCGGATTATGTCGCCATGGCCGCCTTCGATGCACCGATC GGTCTTTCGCTGTCCTCGAGCCTGCGTCTCGACAAGGACAATTTCGAAATCAACCGGTCTGAAACGGGCATCAGCTATTC GGATCGCCGCATCAACGGCAAGCTCAGCTATACGCAGGTCAAGGCACAGCCGGAATACGGATATAACGAAAACCGCGATA TCATCCAGGCTTCCGGTTCGCTGCGCATGGACGACAACTGGTCGCTGTTCGGCTCGATCAATTACGATCTGAACGGAAAA TTTGCCGCAGAGCGTCGTATCGGCATTGCCTATCAGGACGAATGCACGATCTTGACGGTCAGCTATTCCGACGAGGGCAA TATCAATTCCAGCCGTCAGGCCGCCAATGACTGGTCGATCAATGCGCGCCTCGCCTTCCGCACGCTCGGCGACGTCAGCG TCGGTTCGGCCAATGAGGACTGGAACGACATGGACATCGGCTGGAAACCAAACAACTACTGA
Upstream 100 bases:
>100_bases GGAGTGGTGGTGTTGTCCCTCCCACCGTTGCGGTCTGGGTTCCAGTTATCGTGGCGTTGGCTTTGGGGGCAACCATTCTG CTTCATCAGGAGGACGGCTA
Downstream 100 bases:
>100_bases GTTTAAAGGCAGGTCACGCAGCATCGTGGCCTGCCTTTTTGCCATTTGCTCAGTAAAGCCACGGTTTTGCCGCAACAACA CGCCAGTGTCGGCCGGACAT
Product: organic solvent tolerance protein
Products: NA
Alternate protein names: Organic solvent tolerance protein [H]
Number of amino acids: Translated: 793; Mature: 792
Protein sequence:
>793_residues MAVYDRGNIRRLWTALLTGAAVCAYLASSPVAFGQDGLLASASQDDSKLLLTANELTYNRDSQRVIAKGVVRMNYSGYRM VAQQVEYNQQTGRVIAHGNIELIEPGGNKIYADEMDVTDDFGQGFVNALRVETTDNTRIAGESAERLNSDTMVLNNGVYT ACLPCAERPEKAPLWQVKAERVIQDGKTHTVRLEKARLQLFGHSIAYIPFLTVPDNTVKRKSGFLFPQMSMTNKLGFGIG VPYFQVLSDTSDLTVTPTYYTKQGLLLQAELRQRFETGMHTLTIAGISQQSSDTFISGTSDALNDQRGMVATKGDFRINP RWAFGWDAMVQSDNNFSRTYSLKGYKNDVQTNQIYLTGTGERNSFDARGYYFNVQDTDNSELKERKQAIVHPVVDYRYFL PDPIYGGELSLTTNFTSISRSTQDSYAMGGFPRFNGLEGSYTRWTTEAEWKRTITMDSGLQITPILAARGDALWTDMTAA SFTSGGTSYAYEGMINDDAALRGMVTGGLELRYPWLFTALNSNHVIEPIAQIFVRPNEQYAGRFPNEDAQAFVFDATNLF ERDKFSGFDRIEGGTRANIGFRYNGTFDNGYGIRAIAGQSFHLAGENSFASYDLLNVGANSGLESDRSDYVAMAAFDAPI GLSLSSSLRLDKDNFEINRSETGISYSDRRINGKLSYTQVKAQPEYGYNENRDIIQASGSLRMDDNWSLFGSINYDLNGK FAAERRIGIAYQDECTILTVSYSDEGNINSSRQAANDWSINARLAFRTLGDVSVGSANEDWNDMDIGWKPNNY
Sequences:
>Translated_793_residues MAVYDRGNIRRLWTALLTGAAVCAYLASSPVAFGQDGLLASASQDDSKLLLTANELTYNRDSQRVIAKGVVRMNYSGYRM VAQQVEYNQQTGRVIAHGNIELIEPGGNKIYADEMDVTDDFGQGFVNALRVETTDNTRIAGESAERLNSDTMVLNNGVYT ACLPCAERPEKAPLWQVKAERVIQDGKTHTVRLEKARLQLFGHSIAYIPFLTVPDNTVKRKSGFLFPQMSMTNKLGFGIG VPYFQVLSDTSDLTVTPTYYTKQGLLLQAELRQRFETGMHTLTIAGISQQSSDTFISGTSDALNDQRGMVATKGDFRINP RWAFGWDAMVQSDNNFSRTYSLKGYKNDVQTNQIYLTGTGERNSFDARGYYFNVQDTDNSELKERKQAIVHPVVDYRYFL PDPIYGGELSLTTNFTSISRSTQDSYAMGGFPRFNGLEGSYTRWTTEAEWKRTITMDSGLQITPILAARGDALWTDMTAA SFTSGGTSYAYEGMINDDAALRGMVTGGLELRYPWLFTALNSNHVIEPIAQIFVRPNEQYAGRFPNEDAQAFVFDATNLF ERDKFSGFDRIEGGTRANIGFRYNGTFDNGYGIRAIAGQSFHLAGENSFASYDLLNVGANSGLESDRSDYVAMAAFDAPI GLSLSSSLRLDKDNFEINRSETGISYSDRRINGKLSYTQVKAQPEYGYNENRDIIQASGSLRMDDNWSLFGSINYDLNGK FAAERRIGIAYQDECTILTVSYSDEGNINSSRQAANDWSINARLAFRTLGDVSVGSANEDWNDMDIGWKPNNY >Mature_792_residues AVYDRGNIRRLWTALLTGAAVCAYLASSPVAFGQDGLLASASQDDSKLLLTANELTYNRDSQRVIAKGVVRMNYSGYRMV AQQVEYNQQTGRVIAHGNIELIEPGGNKIYADEMDVTDDFGQGFVNALRVETTDNTRIAGESAERLNSDTMVLNNGVYTA CLPCAERPEKAPLWQVKAERVIQDGKTHTVRLEKARLQLFGHSIAYIPFLTVPDNTVKRKSGFLFPQMSMTNKLGFGIGV PYFQVLSDTSDLTVTPTYYTKQGLLLQAELRQRFETGMHTLTIAGISQQSSDTFISGTSDALNDQRGMVATKGDFRINPR WAFGWDAMVQSDNNFSRTYSLKGYKNDVQTNQIYLTGTGERNSFDARGYYFNVQDTDNSELKERKQAIVHPVVDYRYFLP DPIYGGELSLTTNFTSISRSTQDSYAMGGFPRFNGLEGSYTRWTTEAEWKRTITMDSGLQITPILAARGDALWTDMTAAS FTSGGTSYAYEGMINDDAALRGMVTGGLELRYPWLFTALNSNHVIEPIAQIFVRPNEQYAGRFPNEDAQAFVFDATNLFE RDKFSGFDRIEGGTRANIGFRYNGTFDNGYGIRAIAGQSFHLAGENSFASYDLLNVGANSGLESDRSDYVAMAAFDAPIG LSLSSSLRLDKDNFEINRSETGISYSDRRINGKLSYTQVKAQPEYGYNENRDIIQASGSLRMDDNWSLFGSINYDLNGKF AAERRIGIAYQDECTILTVSYSDEGNINSSRQAANDWSINARLAFRTLGDVSVGSANEDWNDMDIGWKPNNY
Specific function: Involved in the assembly of LPS in the outer leaflet of the outer membrane. Determines N-hexane tolerance and is involved in outer membrane permeability. Essential for envelope biogenesis [H]
COG id: COG1452
COG function: function code M; Organic solvent tolerance protein OstA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the lptD family [H]
Homologues:
Organism=Escherichia coli, GI1786239, Length=127, Percent_Identity=29.9212598425197, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: 60 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020889 - InterPro: IPR005653 - InterPro: IPR007543 [H]
Pfam domain/function: PF03968 OstA; PF04453 OstA_C [H]
EC number: NA
Molecular weight: Translated: 88275; Mature: 88144
Theoretical pI: Translated: 4.82; Mature: 4.82
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAVYDRGNIRRLWTALLTGAAVCAYLASSPVAFGQDGLLASASQDDSKLLLTANELTYNR CCEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEEEEECEEECC DSQRVIAKGVVRMNYSGYRMVAQQVEYNQQTGRVIAHGNIELIEPGGNKIYADEMDVTDD CCHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCEEEECCEEEECCCCCEEEECCCCCCCH FGQGFVNALRVETTDNTRIAGESAERLNSDTMVLNNGVYTACLPCAERPEKAPLWQVKAE HHHHCEEEEEEEECCCCEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCCCCEEHHHHH RVIQDGKTHTVRLEKARLQLFGHSIAYIPFLTVPDNTVKRKSGFLFPQMSMTNKLGFGIG HHHHCCCEEEEEEEHHHHHHHCCEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCC VPYFQVLSDTSDLTVTPTYYTKQGLLLQAELRQRFETGMHTLTIAGISQQSSDTFISGTS CCHHHHHCCCCCEEEECCEEECCCCEEEHHHHHHHHCCCEEEEEEECCCCCCCCEEECCC DALNDQRGMVATKGDFRINPRWAFGWDAMVQSDNNFSRTYSLKGYKNDVQTNQIYLTGTG HHCCCCCCEEEECCCEEECCEEECCCHHEEECCCCCEEEEEECCCCCCCCCCEEEEEECC ERNSFDARGYYFNVQDTDNSELKERKQAIVHPVVDYRYFLPDPIYGGELSLTTNFTSISR CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEECCHHHCC STQDSYAMGGFPRFNGLEGSYTRWTTEAEWKRTITMDSGLQITPILAARGDALWTDMTAA CCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEECCCEEEECCCHH SFTSGGTSYAYEGMINDDAALRGMVTGGLELRYPWLFTALNSNHVIEPIAQIFVRPNEQY HCCCCCCCEEEECEECCCHHEEEEEECCEEEECCEEEEEECCCCHHHHHHHHEECCCHHH AGRFPNEDAQAFVFDATNLFERDKFSGFDRIEGGTRANIGFRYNGTFDNGYGIRAIAGQS CCCCCCCCCCEEEEECHHHHHHHCCCCCHHCCCCCEEEEEEEECCCCCCCCCEEEECCCE FHLAGENSFASYDLLNVGANSGLESDRSDYVAMAAFDAPIGLSLSSSLRLDKDNFEINRS EEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCCEEECC ETGISYSDRRINGKLSYTQVKAQPEYGYNENRDIIQASGSLRMDDNWSLFGSINYDLNGK CCCCCCCCCEECCEEEEEEEEECCCCCCCCCCCEEEECCCEEECCCEEEEEEEEECCCCE FAAERRIGIAYQDECTILTVSYSDEGNINSSRQAANDWSINARLAFRTLGDVSVGSANED EEECEEECEEEECCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCEECCCCCCC WNDMDIGWKPNNY CCCCCCCCCCCCC >Mature Secondary Structure AVYDRGNIRRLWTALLTGAAVCAYLASSPVAFGQDGLLASASQDDSKLLLTANELTYNR CEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCEEEEEEECEEECC DSQRVIAKGVVRMNYSGYRMVAQQVEYNQQTGRVIAHGNIELIEPGGNKIYADEMDVTDD CCHHHHCCCEEEECCCCHHHHHHHHHCCCCCCCEEEECCEEEECCCCCEEEECCCCCCCH FGQGFVNALRVETTDNTRIAGESAERLNSDTMVLNNGVYTACLPCAERPEKAPLWQVKAE HHHHCEEEEEEEECCCCEECCCHHHHCCCCEEEEECCCEEEEECCCCCCCCCCEEHHHHH RVIQDGKTHTVRLEKARLQLFGHSIAYIPFLTVPDNTVKRKSGFLFPQMSMTNKLGFGIG HHHHCCCEEEEEEEHHHHHHHCCEEEEEEEEECCCCHHHHHCCCCCCCCCCCCCCCCCCC VPYFQVLSDTSDLTVTPTYYTKQGLLLQAELRQRFETGMHTLTIAGISQQSSDTFISGTS CCHHHHHCCCCCEEEECCEEECCCCEEEHHHHHHHHCCCEEEEEEECCCCCCCCEEECCC DALNDQRGMVATKGDFRINPRWAFGWDAMVQSDNNFSRTYSLKGYKNDVQTNQIYLTGTG HHCCCCCCEEEECCCEEECCEEECCCHHEEECCCCCEEEEEECCCCCCCCCCEEEEEECC ERNSFDARGYYFNVQDTDNSELKERKQAIVHPVVDYRYFLPDPIYGGELSLTTNFTSISR CCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCEEEEEECCHHHCC STQDSYAMGGFPRFNGLEGSYTRWTTEAEWKRTITMDSGLQITPILAARGDALWTDMTAA CCCCCCCCCCCCCCCCCCCCCEEECCCCCCEEEEEECCCCEEEEEEEECCCEEEECCCHH SFTSGGTSYAYEGMINDDAALRGMVTGGLELRYPWLFTALNSNHVIEPIAQIFVRPNEQY HCCCCCCCEEEECEECCCHHEEEEEECCEEEECCEEEEEECCCCHHHHHHHHEECCCHHH AGRFPNEDAQAFVFDATNLFERDKFSGFDRIEGGTRANIGFRYNGTFDNGYGIRAIAGQS CCCCCCCCCCEEEEECHHHHHHHCCCCCHHCCCCCEEEEEEEECCCCCCCCCEEEECCCE FHLAGENSFASYDLLNVGANSGLESDRSDYVAMAAFDAPIGLSLSSSLRLDKDNFEINRS EEEECCCCCCEEEEEECCCCCCCCCCCCCEEEEEEECCCCCCCCCCCEEECCCCCEEECC ETGISYSDRRINGKLSYTQVKAQPEYGYNENRDIIQASGSLRMDDNWSLFGSINYDLNGK CCCCCCCCCEECCEEEEEEEEECCCCCCCCCCCEEEECCCEEECCCEEEEEEEEECCCCE FAAERRIGIAYQDECTILTVSYSDEGNINSSRQAANDWSINARLAFRTLGDVSVGSANED EEECEEECEEEECCEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEECCEECCCCCCC WNDMDIGWKPNNY CCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA